Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
GFRA1P56159 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
GFRA1P56159 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
GFRA1P56159 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
GFRA1P56159 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
GFRA1P56159 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.7■□□□□ 0.74
GFRA1P56159 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
GFRA1P56159 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
GFRA1P56159 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
GFRA1P56159 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
GFRA1P56159 AC027612.3-201ENST00000413684 1047 ntBASIC19.7■□□□□ 0.74
GFRA1P56159 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC19.7■□□□□ 0.74
GFRA1P56159 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
GFRA1P56159 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
GFRA1P56159 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.7■□□□□ 0.74
GFRA1P56159 AC105233.4-201ENST00000642045 216 ntBASIC19.7■□□□□ 0.74
GFRA1P56159 GCA-201ENST00000233612 1694 ntTSL 2 BASIC19.7■□□□□ 0.74
GFRA1P56159 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
GFRA1P56159 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.7■□□□□ 0.74
GFRA1P56159 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
GFRA1P56159 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
GFRA1P56159 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
GFRA1P56159 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
GFRA1P56159 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.7■□□□□ 0.74
GFRA1P56159 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC19.7■□□□□ 0.74
GFRA1P56159 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
GFRA1P56159 LINC01960-201ENST00000563759 1884 ntBASIC19.69■□□□□ 0.74
GFRA1P56159 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.69■□□□□ 0.74
GFRA1P56159 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC19.69■□□□□ 0.74
GFRA1P56159 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.69■□□□□ 0.74
GFRA1P56159 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
GFRA1P56159 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC19.68■□□□□ 0.74
GFRA1P56159 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC19.68■□□□□ 0.74
GFRA1P56159 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19.68■□□□□ 0.74
GFRA1P56159 OXCT2P1-201ENST00000447263 1535 ntBASIC19.68■□□□□ 0.74
GFRA1P56159 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
GFRA1P56159 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
GFRA1P56159 MIR6084-201ENST00000622012 110 ntBASIC19.68■□□□□ 0.74
GFRA1P56159 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
GFRA1P56159 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
GFRA1P56159 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
GFRA1P56159 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC19.68■□□□□ 0.74
GFRA1P56159 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
GFRA1P56159 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
GFRA1P56159 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
GFRA1P56159 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
GFRA1P56159 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
GFRA1P56159 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.67■□□□□ 0.74
GFRA1P56159 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
GFRA1P56159 YBX1P1-201ENST00000445822 960 ntBASIC19.67■□□□□ 0.74
GFRA1P56159 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.67■□□□□ 0.74
GFRA1P56159 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
GFRA1P56159 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
GFRA1P56159 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC19.67■□□□□ 0.74
GFRA1P56159 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
GFRA1P56159 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
GFRA1P56159 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
GFRA1P56159 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.66■□□□□ 0.74
GFRA1P56159 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
GFRA1P56159 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
GFRA1P56159 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.66■□□□□ 0.74
GFRA1P56159 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
GFRA1P56159 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.66■□□□□ 0.74
GFRA1P56159 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
GFRA1P56159 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.66■□□□□ 0.74
GFRA1P56159 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.66■□□□□ 0.74
GFRA1P56159 AC087623.3-201ENST00000607047 1098 ntBASIC19.66■□□□□ 0.74
GFRA1P56159 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
GFRA1P56159 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
GFRA1P56159 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.66■□□□□ 0.74
GFRA1P56159 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
GFRA1P56159 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
GFRA1P56159 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
GFRA1P56159 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
GFRA1P56159 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
GFRA1P56159 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
GFRA1P56159 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
GFRA1P56159 AC123595.1-201ENST00000440769 1046 ntBASIC19.65■□□□□ 0.74
GFRA1P56159 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.65■□□□□ 0.74
GFRA1P56159 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.65■□□□□ 0.74
GFRA1P56159 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.65■□□□□ 0.74
GFRA1P56159 MIR5787-201ENST00000611784 55 ntBASIC19.65■□□□□ 0.74
GFRA1P56159 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.65■□□□□ 0.74
GFRA1P56159 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
GFRA1P56159 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
GFRA1P56159 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.65■□□□□ 0.74
GFRA1P56159 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
GFRA1P56159 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
GFRA1P56159 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
GFRA1P56159 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.64■□□□□ 0.73
GFRA1P56159 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.64■□□□□ 0.73
GFRA1P56159 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.64■□□□□ 0.73
GFRA1P56159 SMUG1P1-201ENST00000590640 811 ntBASIC19.64■□□□□ 0.73
GFRA1P56159 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
GFRA1P56159 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
GFRA1P56159 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
GFRA1P56159 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
GFRA1P56159 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
GFRA1P56159 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
GFRA1P56159 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms