Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC30.78■■■□□ 2.52
MSH6P52701 RPS2P52-201ENST00000469610 820 ntBASIC30.78■■■□□ 2.52
MSH6P52701 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC30.78■■■□□ 2.52
MSH6P52701 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC30.78■■■□□ 2.52
MSH6P52701 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC30.78■■■□□ 2.52
MSH6P52701 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC30.78■■■□□ 2.52
MSH6P52701 AC068587.7-201ENST00000641602 218 ntBASIC30.78■■■□□ 2.52
MSH6P52701 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC30.78■■■□□ 2.52
MSH6P52701 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC30.77■■■□□ 2.52
MSH6P52701 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
MSH6P52701 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC30.77■■■□□ 2.52
MSH6P52701 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
MSH6P52701 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC30.77■■■□□ 2.52
MSH6P52701 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
MSH6P52701 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC30.76■■■□□ 2.52
MSH6P52701 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC30.76■■■□□ 2.51
MSH6P52701 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
MSH6P52701 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC30.76■■■□□ 2.51
MSH6P52701 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
MSH6P52701 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
MSH6P52701 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
MSH6P52701 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
MSH6P52701 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
MSH6P52701 KRT87P-202ENST00000534226 1464 ntBASIC30.76■■■□□ 2.51
MSH6P52701 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC30.76■■■□□ 2.51
MSH6P52701 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC30.75■■■□□ 2.51
MSH6P52701 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC30.75■■■□□ 2.51
MSH6P52701 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC30.75■■■□□ 2.51
MSH6P52701 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC30.75■■■□□ 2.51
MSH6P52701 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
MSH6P52701 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
MSH6P52701 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
MSH6P52701 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC30.75■■■□□ 2.51
MSH6P52701 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC30.75■■■□□ 2.51
MSH6P52701 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
MSH6P52701 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC30.75■■■□□ 2.51
MSH6P52701 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC30.75■■■□□ 2.51
MSH6P52701 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC30.75■■■□□ 2.51
MSH6P52701 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC30.74■■■□□ 2.51
MSH6P52701 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
MSH6P52701 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
MSH6P52701 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC30.74■■■□□ 2.51
MSH6P52701 RNA5SP413-201ENST00000516373 109 ntBASIC30.74■■■□□ 2.51
MSH6P52701 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
MSH6P52701 AC105036.2-201ENST00000569468 176 ntBASIC30.74■■■□□ 2.51
MSH6P52701 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC30.74■■■□□ 2.51
MSH6P52701 AC133552.2-202ENST00000575694 574 ntBASIC30.74■■■□□ 2.51
MSH6P52701 MYCNOS-205ENST00000641950 531 ntBASIC30.74■■■□□ 2.51
MSH6P52701 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC30.73■■■□□ 2.51
MSH6P52701 DUSP8P4-201ENST00000399538 1761 ntBASIC30.73■■■□□ 2.51
MSH6P52701 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
MSH6P52701 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC30.73■■■□□ 2.51
MSH6P52701 BRI3-207ENST00000539286 699 ntTSL 2 BASIC30.73■■■□□ 2.51
MSH6P52701 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC30.73■■■□□ 2.51
MSH6P52701 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC30.73■■■□□ 2.51
MSH6P52701 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
MSH6P52701 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC30.72■■■□□ 2.51
MSH6P52701 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC30.72■■■□□ 2.51
MSH6P52701 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC30.72■■■□□ 2.51
MSH6P52701 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC30.72■■■□□ 2.51
MSH6P52701 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC30.72■■■□□ 2.51
MSH6P52701 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC30.72■■■□□ 2.51
MSH6P52701 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC30.72■■■□□ 2.51
MSH6P52701 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC30.71■■■□□ 2.51
MSH6P52701 CNN2P6-201ENST00000439038 900 ntBASIC30.71■■■□□ 2.51
MSH6P52701 AC098590.1-201ENST00000468126 897 ntBASIC30.71■■■□□ 2.51
MSH6P52701 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC30.71■■■□□ 2.51
MSH6P52701 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC30.71■■■□□ 2.51
MSH6P52701 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
MSH6P52701 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC30.71■■■□□ 2.51
MSH6P52701 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC30.71■■■□□ 2.51
MSH6P52701 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
MSH6P52701 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
MSH6P52701 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC30.7■■■□□ 2.51
MSH6P52701 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
MSH6P52701 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC30.7■■■□□ 2.51
MSH6P52701 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC30.7■■■□□ 2.51
MSH6P52701 EI24-211ENST00000534546 1544 ntTSL 2 BASIC30.7■■■□□ 2.51
MSH6P52701 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
MSH6P52701 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC30.7■■■□□ 2.5
MSH6P52701 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC30.7■■■□□ 2.5
MSH6P52701 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC30.7■■■□□ 2.5
MSH6P52701 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
MSH6P52701 AC010141.3-201ENST00000456659 717 ntBASIC30.69■■■□□ 2.5
MSH6P52701 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC30.69■■■□□ 2.5
MSH6P52701 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC30.69■■■□□ 2.5
MSH6P52701 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
MSH6P52701 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
MSH6P52701 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC30.68■■■□□ 2.5
MSH6P52701 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC30.68■■■□□ 2.5
MSH6P52701 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
MSH6P52701 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC30.68■■■□□ 2.5
MSH6P52701 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC30.68■■■□□ 2.5
MSH6P52701 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC30.68■■■□□ 2.5
MSH6P52701 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC30.68■■■□□ 2.5
MSH6P52701 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
MSH6P52701 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC30.68■■■□□ 2.5
MSH6P52701 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
MSH6P52701 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
MSH6P52701 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC30.67■■■□□ 2.5
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms