Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC19.2■□□□□ 0.66
CX3CR1P49238 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CX3CR1P49238 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CX3CR1P49238 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CX3CR1P49238 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CX3CR1P49238 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CX3CR1P49238 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CX3CR1P49238 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CX3CR1P49238 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC19.2■□□□□ 0.66
CX3CR1P49238 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
CX3CR1P49238 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CX3CR1P49238 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CX3CR1P49238 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CX3CR1P49238 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CX3CR1P49238 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CX3CR1P49238 AC139530.1-201ENST00000575312 1977 ntBASIC19.19■□□□□ 0.66
CX3CR1P49238 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.19■□□□□ 0.66
CX3CR1P49238 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CX3CR1P49238 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CX3CR1P49238 GUSBP5-201ENST00000418136 578 ntBASIC19.19■□□□□ 0.66
CX3CR1P49238 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC19.19■□□□□ 0.66
CX3CR1P49238 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC19.19■□□□□ 0.66
CX3CR1P49238 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CX3CR1P49238 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CX3CR1P49238 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CX3CR1P49238 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CX3CR1P49238 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CX3CR1P49238 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
CX3CR1P49238 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CX3CR1P49238 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CX3CR1P49238 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CX3CR1P49238 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC19.18■□□□□ 0.66
CX3CR1P49238 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC19.18■□□□□ 0.66
CX3CR1P49238 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC19.18■□□□□ 0.66
CX3CR1P49238 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC19.18■□□□□ 0.66
CX3CR1P49238 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
CX3CR1P49238 TRIR-205ENST00000592273 783 ntTSL 3 BASIC19.18■□□□□ 0.66
CX3CR1P49238 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CX3CR1P49238 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CX3CR1P49238 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CX3CR1P49238 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CX3CR1P49238 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CX3CR1P49238 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CX3CR1P49238 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CX3CR1P49238 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CX3CR1P49238 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CX3CR1P49238 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CX3CR1P49238 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CX3CR1P49238 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CX3CR1P49238 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CX3CR1P49238 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CX3CR1P49238 AC092053.2-201ENST00000640557 1818 ntBASIC19.17■□□□□ 0.66
CX3CR1P49238 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC19.17■□□□□ 0.66
CX3CR1P49238 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC19.17■□□□□ 0.66
CX3CR1P49238 GRAMD4P7-201ENST00000578182 1232 ntBASIC19.17■□□□□ 0.66
CX3CR1P49238 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CX3CR1P49238 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CX3CR1P49238 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CX3CR1P49238 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CX3CR1P49238 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CX3CR1P49238 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CX3CR1P49238 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CX3CR1P49238 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC19.17■□□□□ 0.66
CX3CR1P49238 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CX3CR1P49238 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CX3CR1P49238 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CX3CR1P49238 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CX3CR1P49238 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CX3CR1P49238 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CX3CR1P49238 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CX3CR1P49238 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CX3CR1P49238 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CX3CR1P49238 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CX3CR1P49238 AL356740.2-201ENST00000601559 647 ntBASIC19.16■□□□□ 0.66
CX3CR1P49238 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC19.16■□□□□ 0.66
CX3CR1P49238 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC19.16■□□□□ 0.66
CX3CR1P49238 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CX3CR1P49238 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CX3CR1P49238 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CX3CR1P49238 AC137767.1-201ENST00000602918 1920 ntBASIC19.15■□□□□ 0.66
CX3CR1P49238 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.15■□□□□ 0.66
CX3CR1P49238 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.15■□□□□ 0.66
CX3CR1P49238 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
CX3CR1P49238 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CX3CR1P49238 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.15■□□□□ 0.66
CX3CR1P49238 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CX3CR1P49238 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.15■□□□□ 0.66
CX3CR1P49238 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC19.15■□□□□ 0.66
CX3CR1P49238 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CX3CR1P49238 AC241377.3-202ENST00000626088 1088 ntBASIC19.15■□□□□ 0.66
CX3CR1P49238 AC241585.3-202ENST00000628937 1088 ntBASIC19.15■□□□□ 0.66
CX3CR1P49238 AC245100.8-202ENST00000629247 1058 ntBASIC19.15■□□□□ 0.66
CX3CR1P49238 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CX3CR1P49238 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
CX3CR1P49238 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CX3CR1P49238 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CX3CR1P49238 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CX3CR1P49238 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CX3CR1P49238 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CX3CR1P49238 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms