Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC29.41■■■□□ 2.3
COL18A1P39060 METTL26-203ENST00000397664 604 ntTSL 2 BASIC29.41■■■□□ 2.3
COL18A1P39060 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC29.41■■■□□ 2.3
COL18A1P39060 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC29.41■■■□□ 2.3
COL18A1P39060 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
COL18A1P39060 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC29.41■■■□□ 2.3
COL18A1P39060 METTL15-202ENST00000403099 795 ntTSL 5 BASIC29.41■■■□□ 2.3
COL18A1P39060 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
COL18A1P39060 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
COL18A1P39060 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
COL18A1P39060 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC29.4■■■□□ 2.3
COL18A1P39060 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC29.4■■■□□ 2.3
COL18A1P39060 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
COL18A1P39060 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC29.4■■■□□ 2.3
COL18A1P39060 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC29.4■■■□□ 2.3
COL18A1P39060 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
COL18A1P39060 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC29.39■■■□□ 2.3
COL18A1P39060 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
COL18A1P39060 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC29.39■■■□□ 2.3
COL18A1P39060 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC29.39■■■□□ 2.29
COL18A1P39060 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC29.39■■■□□ 2.29
COL18A1P39060 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC29.39■■■□□ 2.29
COL18A1P39060 TESC-206ENST00000541210 936 ntTSL 3 BASIC29.39■■■□□ 2.29
COL18A1P39060 DUX4L16-201ENST00000555130 1264 ntBASIC29.39■■■□□ 2.29
COL18A1P39060 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC29.39■■■□□ 2.29
COL18A1P39060 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC29.39■■■□□ 2.29
COL18A1P39060 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
COL18A1P39060 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
COL18A1P39060 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
COL18A1P39060 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC29.38■■■□□ 2.29
COL18A1P39060 ESRRAP2-201ENST00000418437 1549 ntBASIC29.38■■■□□ 2.29
COL18A1P39060 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
COL18A1P39060 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
COL18A1P39060 APTR-205ENST00000447009 902 ntTSL 2 BASIC29.38■■■□□ 2.29
COL18A1P39060 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC29.38■■■□□ 2.29
COL18A1P39060 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC29.38■■■□□ 2.29
COL18A1P39060 MAZ-216ENST00000616501 991 ntTSL 5 BASIC29.38■■■□□ 2.29
COL18A1P39060 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC29.38■■■□□ 2.29
COL18A1P39060 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC29.38■■■□□ 2.29
COL18A1P39060 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
COL18A1P39060 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC29.37■■■□□ 2.29
COL18A1P39060 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC29.37■■■□□ 2.29
COL18A1P39060 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
COL18A1P39060 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC29.37■■■□□ 2.29
COL18A1P39060 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC29.37■■■□□ 2.29
COL18A1P39060 AC079140.4-201ENST00000507448 529 ntBASIC29.37■■■□□ 2.29
COL18A1P39060 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC29.37■■■□□ 2.29
COL18A1P39060 AC005224.4-201ENST00000583262 1652 ntBASIC29.37■■■□□ 2.29
COL18A1P39060 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
COL18A1P39060 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC29.37■■■□□ 2.29
COL18A1P39060 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC29.36■■■□□ 2.29
COL18A1P39060 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC29.36■■■□□ 2.29
COL18A1P39060 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC29.36■■■□□ 2.29
COL18A1P39060 UBE2DNL-204ENST00000602536 740 ntBASIC29.36■■■□□ 2.29
COL18A1P39060 AC104187.1-201ENST00000607510 612 ntBASIC29.36■■■□□ 2.29
COL18A1P39060 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
COL18A1P39060 KRT87P-202ENST00000534226 1464 ntBASIC29.36■■■□□ 2.29
COL18A1P39060 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC29.36■■■□□ 2.29
COL18A1P39060 H19-210ENST00000439725 1929 ntTSL 2 BASIC29.35■■■□□ 2.29
COL18A1P39060 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
COL18A1P39060 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
COL18A1P39060 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC29.35■■■□□ 2.29
COL18A1P39060 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC29.35■■■□□ 2.29
COL18A1P39060 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
COL18A1P39060 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC29.35■■■□□ 2.29
COL18A1P39060 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
COL18A1P39060 GPX1P1-201ENST00000388829 606 ntBASIC29.34■■■□□ 2.29
COL18A1P39060 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
COL18A1P39060 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC29.34■■■□□ 2.29
COL18A1P39060 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC29.34■■■□□ 2.29
COL18A1P39060 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC29.34■■■□□ 2.29
COL18A1P39060 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC29.33■■■□□ 2.29
COL18A1P39060 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC29.33■■■□□ 2.29
COL18A1P39060 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
COL18A1P39060 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC29.33■■■□□ 2.29
COL18A1P39060 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
COL18A1P39060 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC29.33■■■□□ 2.29
COL18A1P39060 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC29.33■■■□□ 2.29
COL18A1P39060 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
COL18A1P39060 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
COL18A1P39060 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
COL18A1P39060 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC29.32■■■□□ 2.28
COL18A1P39060 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC29.32■■■□□ 2.28
COL18A1P39060 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
COL18A1P39060 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC29.32■■■□□ 2.28
COL18A1P39060 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC29.31■■■□□ 2.28
COL18A1P39060 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC29.31■■■□□ 2.28
COL18A1P39060 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC29.31■■■□□ 2.28
COL18A1P39060 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
COL18A1P39060 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC29.31■■■□□ 2.28
COL18A1P39060 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC29.31■■■□□ 2.28
COL18A1P39060 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
COL18A1P39060 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC29.31■■■□□ 2.28
COL18A1P39060 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC29.31■■■□□ 2.28
COL18A1P39060 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC29.31■■■□□ 2.28
COL18A1P39060 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC29.31■■■□□ 2.28
COL18A1P39060 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC29.31■■■□□ 2.28
COL18A1P39060 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC29.31■■■□□ 2.28
COL18A1P39060 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC29.31■■■□□ 2.28
COL18A1P39060 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms