Protein–RNA interactions for Protein: P0CW20

LIMS4, LIM and senescent cell antigen-like-containing domain protein 4, humanhuman

Predictions only

Length 117 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4P0CW20 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
LIMS4P0CW20 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMS4P0CW20 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMS4P0CW20 FP325331.1-202ENST00000623531 1380 ntBASIC19.48■□□□□ 0.71
LIMS4P0CW20 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIMS4P0CW20 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMS4P0CW20 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC19.48■□□□□ 0.71
LIMS4P0CW20 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC19.48■□□□□ 0.71
LIMS4P0CW20 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
LIMS4P0CW20 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIMS4P0CW20 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMS4P0CW20 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
LIMS4P0CW20 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.47■□□□□ 0.71
LIMS4P0CW20 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.47■□□□□ 0.71
LIMS4P0CW20 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMS4P0CW20 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMS4P0CW20 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMS4P0CW20 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC19.47■□□□□ 0.71
LIMS4P0CW20 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC19.47■□□□□ 0.71
LIMS4P0CW20 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMS4P0CW20 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMS4P0CW20 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
LIMS4P0CW20 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.47■□□□□ 0.71
LIMS4P0CW20 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.47■□□□□ 0.71
LIMS4P0CW20 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMS4P0CW20 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
LIMS4P0CW20 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LIMS4P0CW20 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMS4P0CW20 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMS4P0CW20 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC19.46■□□□□ 0.71
LIMS4P0CW20 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC19.46■□□□□ 0.71
LIMS4P0CW20 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LIMS4P0CW20 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMS4P0CW20 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMS4P0CW20 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMS4P0CW20 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMS4P0CW20 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
LIMS4P0CW20 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.45■□□□□ 0.7
LIMS4P0CW20 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMS4P0CW20 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMS4P0CW20 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMS4P0CW20 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC19.45■□□□□ 0.7
LIMS4P0CW20 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMS4P0CW20 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC19.45■□□□□ 0.7
LIMS4P0CW20 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC19.45■□□□□ 0.7
LIMS4P0CW20 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC19.45■□□□□ 0.7
LIMS4P0CW20 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMS4P0CW20 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.45■□□□□ 0.7
LIMS4P0CW20 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LIMS4P0CW20 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMS4P0CW20 AC073130.3-201ENST00000624389 2278 ntBASIC19.45■□□□□ 0.7
LIMS4P0CW20 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMS4P0CW20 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
LIMS4P0CW20 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
LIMS4P0CW20 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
LIMS4P0CW20 ASB1-202ENST00000409297 878 ntTSL 5 BASIC19.44■□□□□ 0.7
LIMS4P0CW20 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIMS4P0CW20 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
LIMS4P0CW20 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMS4P0CW20 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMS4P0CW20 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMS4P0CW20 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIMS4P0CW20 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIMS4P0CW20 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMS4P0CW20 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
LIMS4P0CW20 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMS4P0CW20 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIMS4P0CW20 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMS4P0CW20 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMS4P0CW20 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMS4P0CW20 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMS4P0CW20 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMS4P0CW20 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMS4P0CW20 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMS4P0CW20 BHLHE23-202ENST00000612929 1109 ntBASIC19.43■□□□□ 0.7
LIMS4P0CW20 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
LIMS4P0CW20 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMS4P0CW20 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
LIMS4P0CW20 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMS4P0CW20 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIMS4P0CW20 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIMS4P0CW20 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
LIMS4P0CW20 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC19.42■□□□□ 0.7
LIMS4P0CW20 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIMS4P0CW20 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIMS4P0CW20 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMS4P0CW20 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.42■□□□□ 0.7
LIMS4P0CW20 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
LIMS4P0CW20 BEX3-202ENST00000372634 753 ntTSL 2 BASIC19.42■□□□□ 0.7
LIMS4P0CW20 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC19.42■□□□□ 0.7
LIMS4P0CW20 CA15P2-201ENST00000611168 834 ntBASIC19.42■□□□□ 0.7
LIMS4P0CW20 AC074183.2-201ENST00000623112 922 ntBASIC19.42■□□□□ 0.7
LIMS4P0CW20 AC009086.3-201ENST00000623486 1008 ntBASIC19.42■□□□□ 0.7
LIMS4P0CW20 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC19.42■□□□□ 0.7
LIMS4P0CW20 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMS4P0CW20 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMS4P0CW20 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIMS4P0CW20 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMS4P0CW20 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.41■□□□□ 0.7
LIMS4P0CW20 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms