Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
LIMS3P0CW19 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMS3P0CW19 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMS3P0CW19 FP325331.1-202ENST00000623531 1380 ntBASIC19.48■□□□□ 0.71
LIMS3P0CW19 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIMS3P0CW19 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMS3P0CW19 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC19.48■□□□□ 0.71
LIMS3P0CW19 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC19.48■□□□□ 0.71
LIMS3P0CW19 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
LIMS3P0CW19 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIMS3P0CW19 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMS3P0CW19 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
LIMS3P0CW19 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.47■□□□□ 0.71
LIMS3P0CW19 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.47■□□□□ 0.71
LIMS3P0CW19 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMS3P0CW19 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMS3P0CW19 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMS3P0CW19 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC19.47■□□□□ 0.71
LIMS3P0CW19 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC19.47■□□□□ 0.71
LIMS3P0CW19 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMS3P0CW19 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMS3P0CW19 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
LIMS3P0CW19 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.47■□□□□ 0.71
LIMS3P0CW19 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.47■□□□□ 0.71
LIMS3P0CW19 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMS3P0CW19 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
LIMS3P0CW19 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LIMS3P0CW19 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMS3P0CW19 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMS3P0CW19 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC19.46■□□□□ 0.71
LIMS3P0CW19 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC19.46■□□□□ 0.71
LIMS3P0CW19 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LIMS3P0CW19 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMS3P0CW19 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMS3P0CW19 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMS3P0CW19 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMS3P0CW19 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
LIMS3P0CW19 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.45■□□□□ 0.7
LIMS3P0CW19 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMS3P0CW19 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMS3P0CW19 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMS3P0CW19 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC19.45■□□□□ 0.7
LIMS3P0CW19 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMS3P0CW19 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC19.45■□□□□ 0.7
LIMS3P0CW19 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC19.45■□□□□ 0.7
LIMS3P0CW19 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC19.45■□□□□ 0.7
LIMS3P0CW19 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMS3P0CW19 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.45■□□□□ 0.7
LIMS3P0CW19 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LIMS3P0CW19 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMS3P0CW19 AC073130.3-201ENST00000624389 2278 ntBASIC19.45■□□□□ 0.7
LIMS3P0CW19 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMS3P0CW19 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
LIMS3P0CW19 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
LIMS3P0CW19 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
LIMS3P0CW19 ASB1-202ENST00000409297 878 ntTSL 5 BASIC19.44■□□□□ 0.7
LIMS3P0CW19 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIMS3P0CW19 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
LIMS3P0CW19 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMS3P0CW19 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMS3P0CW19 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMS3P0CW19 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIMS3P0CW19 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIMS3P0CW19 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMS3P0CW19 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
LIMS3P0CW19 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMS3P0CW19 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIMS3P0CW19 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMS3P0CW19 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMS3P0CW19 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMS3P0CW19 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMS3P0CW19 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMS3P0CW19 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMS3P0CW19 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMS3P0CW19 BHLHE23-202ENST00000612929 1109 ntBASIC19.43■□□□□ 0.7
LIMS3P0CW19 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
LIMS3P0CW19 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMS3P0CW19 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
LIMS3P0CW19 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMS3P0CW19 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIMS3P0CW19 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIMS3P0CW19 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
LIMS3P0CW19 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC19.42■□□□□ 0.7
LIMS3P0CW19 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIMS3P0CW19 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIMS3P0CW19 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMS3P0CW19 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.42■□□□□ 0.7
LIMS3P0CW19 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
LIMS3P0CW19 BEX3-202ENST00000372634 753 ntTSL 2 BASIC19.42■□□□□ 0.7
LIMS3P0CW19 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC19.42■□□□□ 0.7
LIMS3P0CW19 CA15P2-201ENST00000611168 834 ntBASIC19.42■□□□□ 0.7
LIMS3P0CW19 AC074183.2-201ENST00000623112 922 ntBASIC19.42■□□□□ 0.7
LIMS3P0CW19 AC009086.3-201ENST00000623486 1008 ntBASIC19.42■□□□□ 0.7
LIMS3P0CW19 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC19.42■□□□□ 0.7
LIMS3P0CW19 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMS3P0CW19 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMS3P0CW19 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIMS3P0CW19 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMS3P0CW19 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.41■□□□□ 0.7
LIMS3P0CW19 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms