Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC31.44■■■□□ 2.62
NPHP4O75161 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC31.44■■■□□ 2.62
NPHP4O75161 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
NPHP4O75161 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
NPHP4O75161 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
NPHP4O75161 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC31.43■■■□□ 2.62
NPHP4O75161 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
NPHP4O75161 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC31.43■■■□□ 2.62
NPHP4O75161 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC31.43■■■□□ 2.62
NPHP4O75161 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC31.43■■■□□ 2.62
NPHP4O75161 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
NPHP4O75161 EI24-211ENST00000534546 1544 ntTSL 2 BASIC31.43■■■□□ 2.62
NPHP4O75161 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
NPHP4O75161 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC31.42■■■□□ 2.62
NPHP4O75161 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC31.42■■■□□ 2.62
NPHP4O75161 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
NPHP4O75161 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
NPHP4O75161 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC31.41■■■□□ 2.62
NPHP4O75161 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC31.41■■■□□ 2.62
NPHP4O75161 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC31.41■■■□□ 2.62
NPHP4O75161 SLC7A5P1-201ENST00000568957 537 ntBASIC31.41■■■□□ 2.62
NPHP4O75161 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
NPHP4O75161 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
NPHP4O75161 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC31.41■■■□□ 2.62
NPHP4O75161 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC31.41■■■□□ 2.62
NPHP4O75161 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
NPHP4O75161 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC31.41■■■□□ 2.62
NPHP4O75161 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
NPHP4O75161 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC31.41■■■□□ 2.62
NPHP4O75161 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
NPHP4O75161 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC31.4■■■□□ 2.62
NPHP4O75161 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC31.4■■■□□ 2.62
NPHP4O75161 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC31.4■■■□□ 2.62
NPHP4O75161 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC31.4■■■□□ 2.62
NPHP4O75161 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC31.4■■■□□ 2.62
NPHP4O75161 AC010141.3-201ENST00000456659 717 ntBASIC31.4■■■□□ 2.62
NPHP4O75161 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
NPHP4O75161 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
NPHP4O75161 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC31.39■■■□□ 2.62
NPHP4O75161 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC31.39■■■□□ 2.62
NPHP4O75161 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC31.39■■■□□ 2.62
NPHP4O75161 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
NPHP4O75161 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC31.38■■■□□ 2.61
NPHP4O75161 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC31.38■■■□□ 2.61
NPHP4O75161 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC31.38■■■□□ 2.61
NPHP4O75161 GCSHP5-201ENST00000443090 522 ntBASIC31.38■■■□□ 2.61
NPHP4O75161 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC31.37■■■□□ 2.61
NPHP4O75161 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC31.37■■■□□ 2.61
NPHP4O75161 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
NPHP4O75161 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC31.37■■■□□ 2.61
NPHP4O75161 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
NPHP4O75161 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC31.37■■■□□ 2.61
NPHP4O75161 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC31.37■■■□□ 2.61
NPHP4O75161 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC31.36■■■□□ 2.61
NPHP4O75161 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
NPHP4O75161 DUSP5P2-201ENST00000426873 1033 ntBASIC31.36■■■□□ 2.61
NPHP4O75161 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
NPHP4O75161 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
NPHP4O75161 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
NPHP4O75161 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
NPHP4O75161 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
NPHP4O75161 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
NPHP4O75161 AL596275.1-201ENST00000423464 877 ntBASIC31.35■■■□□ 2.61
NPHP4O75161 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC31.35■■■□□ 2.61
NPHP4O75161 MIR4758-201ENST00000577688 71 ntBASIC31.35■■■□□ 2.61
NPHP4O75161 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
NPHP4O75161 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
NPHP4O75161 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
NPHP4O75161 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
NPHP4O75161 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC31.34■■■□□ 2.61
NPHP4O75161 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC31.34■■■□□ 2.61
NPHP4O75161 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
NPHP4O75161 RARRES2P4-201ENST00000514074 484 ntBASIC31.34■■■□□ 2.61
NPHP4O75161 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC31.34■■■□□ 2.61
NPHP4O75161 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC31.34■■■□□ 2.61
NPHP4O75161 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC31.34■■■□□ 2.61
NPHP4O75161 AC005224.4-201ENST00000583262 1652 ntBASIC31.34■■■□□ 2.61
NPHP4O75161 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
NPHP4O75161 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC31.34■■■□□ 2.61
NPHP4O75161 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
NPHP4O75161 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC31.33■■■□□ 2.61
NPHP4O75161 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC31.33■■■□□ 2.61
NPHP4O75161 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC31.33■■■□□ 2.61
NPHP4O75161 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
NPHP4O75161 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
NPHP4O75161 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC31.33■■■□□ 2.61
NPHP4O75161 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC31.33■■■□□ 2.61
NPHP4O75161 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC31.32■■■□□ 2.61
NPHP4O75161 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC31.32■■■□□ 2.61
NPHP4O75161 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC31.32■■■□□ 2.61
NPHP4O75161 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC31.32■■■□□ 2.61
NPHP4O75161 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC31.32■■■□□ 2.61
NPHP4O75161 MARS-234ENST00000630571 216 ntTSL 5 BASIC31.32■■■□□ 2.61
NPHP4O75161 MARS-235ENST00000630803 183 ntTSL 3 BASIC31.32■■■□□ 2.61
NPHP4O75161 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.61
NPHP4O75161 TMEM202-AS1-202ENST00000565181 2325 ntBASIC31.32■■■□□ 2.6
NPHP4O75161 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC31.32■■■□□ 2.6
NPHP4O75161 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC31.32■■■□□ 2.6
NPHP4O75161 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
NPHP4O75161 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC31.32■■■□□ 2.6
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms