Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
CDX4O14627 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CDX4O14627 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CDX4O14627 SLC29A4P1-201ENST00000398760 971 ntBASIC21.43■■□□□ 1.02
CDX4O14627 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC21.43■■□□□ 1.02
CDX4O14627 AC010141.3-201ENST00000456659 717 ntBASIC21.43■■□□□ 1.02
CDX4O14627 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CDX4O14627 AC008687.6-201ENST00000596318 630 ntBASIC21.43■■□□□ 1.02
CDX4O14627 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.43■■□□□ 1.02
CDX4O14627 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CDX4O14627 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CDX4O14627 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
CDX4O14627 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
CDX4O14627 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC21.43■■□□□ 1.02
CDX4O14627 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CDX4O14627 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CDX4O14627 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
CDX4O14627 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CDX4O14627 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CDX4O14627 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
CDX4O14627 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CDX4O14627 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CDX4O14627 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CDX4O14627 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CDX4O14627 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.42■■□□□ 1.02
CDX4O14627 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC21.42■■□□□ 1.02
CDX4O14627 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CDX4O14627 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.42■■□□□ 1.02
CDX4O14627 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.42■■□□□ 1.02
CDX4O14627 AC104187.1-201ENST00000607510 612 ntBASIC21.42■■□□□ 1.02
CDX4O14627 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CDX4O14627 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
CDX4O14627 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC21.41■■□□□ 1.02
CDX4O14627 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.41■■□□□ 1.02
CDX4O14627 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.41■■□□□ 1.02
CDX4O14627 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CDX4O14627 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC21.41■■□□□ 1.02
CDX4O14627 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.41■■□□□ 1.02
CDX4O14627 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CDX4O14627 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CDX4O14627 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
CDX4O14627 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDX4O14627 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDX4O14627 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.4■■□□□ 1.02
CDX4O14627 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDX4O14627 TBCB-214ENST00000629269 413 ntTSL 5 BASIC21.4■■□□□ 1.02
CDX4O14627 AC133041.1-202ENST00000642053 222 ntBASIC21.4■■□□□ 1.02
CDX4O14627 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDX4O14627 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDX4O14627 AC004687.1-201ENST00000579003 1625 ntBASIC21.4■■□□□ 1.02
CDX4O14627 AC073210.2-201ENST00000430369 194 ntBASIC21.39■■□□□ 1.01
CDX4O14627 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CDX4O14627 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CDX4O14627 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC21.39■■□□□ 1.01
CDX4O14627 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
CDX4O14627 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.39■■□□□ 1.01
CDX4O14627 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC21.39■■□□□ 1.01
CDX4O14627 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CDX4O14627 AC087239.1-201ENST00000622671 572 ntBASIC21.39■■□□□ 1.01
CDX4O14627 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CDX4O14627 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CDX4O14627 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.39■■□□□ 1.01
CDX4O14627 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.38■■□□□ 1.01
CDX4O14627 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDX4O14627 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CDX4O14627 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
CDX4O14627 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDX4O14627 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDX4O14627 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.38■■□□□ 1.01
CDX4O14627 UBE2DNL-204ENST00000602536 740 ntBASIC21.38■■□□□ 1.01
CDX4O14627 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDX4O14627 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDX4O14627 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDX4O14627 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.38■■□□□ 1.01
CDX4O14627 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC21.38■■□□□ 1.01
CDX4O14627 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.38■■□□□ 1.01
CDX4O14627 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
CDX4O14627 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
CDX4O14627 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
CDX4O14627 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC21.37■■□□□ 1.01
CDX4O14627 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.37■■□□□ 1.01
CDX4O14627 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC21.37■■□□□ 1.01
CDX4O14627 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.37■■□□□ 1.01
CDX4O14627 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.37■■□□□ 1.01
CDX4O14627 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
CDX4O14627 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
CDX4O14627 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.37■■□□□ 1.01
CDX4O14627 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
CDX4O14627 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CDX4O14627 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.36■■□□□ 1.01
CDX4O14627 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CDX4O14627 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC21.36■■□□□ 1.01
CDX4O14627 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
CDX4O14627 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CDX4O14627 OXCT2P1-201ENST00000447263 1535 ntBASIC21.35■■□□□ 1.01
CDX4O14627 KRT87P-202ENST00000534226 1464 ntBASIC21.35■■□□□ 1.01
CDX4O14627 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDX4O14627 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC21.35■■□□□ 1.01
CDX4O14627 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CDX4O14627 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms