Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.3■■□□□ 1
UBFD1O14562 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
UBFD1O14562 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.3■■□□□ 1
UBFD1O14562 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.3■■□□□ 1
UBFD1O14562 AC010542.4-201ENST00000563151 1910 ntBASIC21.3■■□□□ 1
UBFD1O14562 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
UBFD1O14562 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.3■■□□□ 1
UBFD1O14562 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.3■■□□□ 1
UBFD1O14562 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
UBFD1O14562 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
UBFD1O14562 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.3■■□□□ 1
UBFD1O14562 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
UBFD1O14562 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.29■■□□□ 1
UBFD1O14562 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.29■■□□□ 1
UBFD1O14562 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
UBFD1O14562 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
UBFD1O14562 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
UBFD1O14562 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.29■■□□□ 1
UBFD1O14562 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
UBFD1O14562 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.29■■□□□ 1
UBFD1O14562 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
UBFD1O14562 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
UBFD1O14562 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
UBFD1O14562 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.28■■□□□ 1
UBFD1O14562 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
UBFD1O14562 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
UBFD1O14562 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.28■■□□□ 1
UBFD1O14562 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.28■■□□□ 1
UBFD1O14562 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.28■■□□□ 1
UBFD1O14562 TSPY9P-201ENST00000440215 945 ntBASIC21.28■■□□□ 1
UBFD1O14562 TSPY11P-201ENST00000442607 1045 ntBASIC21.28■■□□□ 1
UBFD1O14562 AC009299.2-201ENST00000482477 511 ntBASIC21.28■■□□□ 1
UBFD1O14562 CA15P2-201ENST00000611168 834 ntBASIC21.28■■□□□ 1
UBFD1O14562 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
UBFD1O14562 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
UBFD1O14562 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
UBFD1O14562 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.28■■□□□ 1
UBFD1O14562 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
UBFD1O14562 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
UBFD1O14562 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
UBFD1O14562 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.27■■□□□ 1
UBFD1O14562 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
UBFD1O14562 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
UBFD1O14562 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
UBFD1O14562 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.27■■□□□ 1
UBFD1O14562 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
UBFD1O14562 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
UBFD1O14562 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.27■□□□□ 0.99
UBFD1O14562 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
UBFD1O14562 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
UBFD1O14562 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
UBFD1O14562 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.26■□□□□ 0.99
UBFD1O14562 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
UBFD1O14562 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.26■□□□□ 0.99
UBFD1O14562 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.26■□□□□ 0.99
UBFD1O14562 AL451085.2-201ENST00000605085 799 ntBASIC21.26■□□□□ 0.99
UBFD1O14562 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
UBFD1O14562 FAM99A-202ENST00000538190 1989 ntBASIC21.26■□□□□ 0.99
UBFD1O14562 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
UBFD1O14562 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
UBFD1O14562 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
UBFD1O14562 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
UBFD1O14562 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UBFD1O14562 AC026310.3-201ENST00000625186 2373 ntBASIC21.25■□□□□ 0.99
UBFD1O14562 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.25■□□□□ 0.99
UBFD1O14562 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
UBFD1O14562 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.25■□□□□ 0.99
UBFD1O14562 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
UBFD1O14562 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.25■□□□□ 0.99
UBFD1O14562 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
UBFD1O14562 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
UBFD1O14562 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.24■□□□□ 0.99
UBFD1O14562 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBFD1O14562 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
UBFD1O14562 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBFD1O14562 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBFD1O14562 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBFD1O14562 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.24■□□□□ 0.99
UBFD1O14562 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
UBFD1O14562 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBFD1O14562 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
UBFD1O14562 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
UBFD1O14562 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBFD1O14562 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBFD1O14562 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UBFD1O14562 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UBFD1O14562 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.23■□□□□ 0.99
UBFD1O14562 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.23■□□□□ 0.99
UBFD1O14562 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UBFD1O14562 AL499627.2-201ENST00000606283 725 ntBASIC21.23■□□□□ 0.99
UBFD1O14562 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
UBFD1O14562 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UBFD1O14562 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.23■□□□□ 0.99
UBFD1O14562 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
UBFD1O14562 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
UBFD1O14562 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
UBFD1O14562 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.22■□□□□ 0.99
UBFD1O14562 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
UBFD1O14562 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
UBFD1O14562 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms