Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV39A0A0B4J263 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV39A0A0B4J263 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV39A0A0B4J263 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
TRAV39A0A0B4J263 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV39A0A0B4J263 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
TRAV39A0A0B4J263 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC18.32■□□□□ 0.52
TRAV39A0A0B4J263 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV39A0A0B4J263 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV39A0A0B4J263 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC18.32■□□□□ 0.52
TRAV39A0A0B4J263 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV39A0A0B4J263 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV39A0A0B4J263 LINC01960-201ENST00000563759 1884 ntBASIC18.32■□□□□ 0.52
TRAV39A0A0B4J263 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV39A0A0B4J263 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
TRAV39A0A0B4J263 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV39A0A0B4J263 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
TRAV39A0A0B4J263 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV39A0A0B4J263 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV39A0A0B4J263 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC18.32■□□□□ 0.52
TRAV39A0A0B4J263 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV39A0A0B4J263 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV39A0A0B4J263 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV39A0A0B4J263 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TRAV39A0A0B4J263 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV39A0A0B4J263 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC18.31■□□□□ 0.52
TRAV39A0A0B4J263 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV39A0A0B4J263 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC18.31■□□□□ 0.52
TRAV39A0A0B4J263 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV39A0A0B4J263 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV39A0A0B4J263 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
TRAV39A0A0B4J263 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV39A0A0B4J263 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV39A0A0B4J263 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC18.3■□□□□ 0.52
TRAV39A0A0B4J263 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV39A0A0B4J263 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV39A0A0B4J263 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
TRAV39A0A0B4J263 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV39A0A0B4J263 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV39A0A0B4J263 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
TRAV39A0A0B4J263 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC18.3■□□□□ 0.52
TRAV39A0A0B4J263 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC18.3■□□□□ 0.52
TRAV39A0A0B4J263 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
TRAV39A0A0B4J263 WWC2-AS2-201ENST00000578387 2183 ntBASIC18.3■□□□□ 0.52
TRAV39A0A0B4J263 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV39A0A0B4J263 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV39A0A0B4J263 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV39A0A0B4J263 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC18.3■□□□□ 0.52
TRAV39A0A0B4J263 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV39A0A0B4J263 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC18.3■□□□□ 0.52
TRAV39A0A0B4J263 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC18.3■□□□□ 0.52
TRAV39A0A0B4J263 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV39A0A0B4J263 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV39A0A0B4J263 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
TRAV39A0A0B4J263 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV39A0A0B4J263 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC18.3■□□□□ 0.52
TRAV39A0A0B4J263 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
TRAV39A0A0B4J263 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV39A0A0B4J263 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC18.29■□□□□ 0.52
TRAV39A0A0B4J263 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV39A0A0B4J263 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV39A0A0B4J263 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV39A0A0B4J263 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV39A0A0B4J263 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV39A0A0B4J263 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV39A0A0B4J263 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV39A0A0B4J263 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV39A0A0B4J263 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV39A0A0B4J263 AC006455.2-201ENST00000429931 906 ntBASIC18.29■□□□□ 0.52
TRAV39A0A0B4J263 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC18.29■□□□□ 0.52
TRAV39A0A0B4J263 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV39A0A0B4J263 RASSF1-AS1-201ENST00000629828 790 ntBASIC18.29■□□□□ 0.52
TRAV39A0A0B4J263 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
TRAV39A0A0B4J263 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
TRAV39A0A0B4J263 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
TRAV39A0A0B4J263 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
TRAV39A0A0B4J263 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC18.28■□□□□ 0.52
TRAV39A0A0B4J263 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV39A0A0B4J263 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
TRAV39A0A0B4J263 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV39A0A0B4J263 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV39A0A0B4J263 AL356740.2-201ENST00000601559 647 ntBASIC18.28■□□□□ 0.52
TRAV39A0A0B4J263 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
TRAV39A0A0B4J263 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV39A0A0B4J263 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC18.28■□□□□ 0.52
TRAV39A0A0B4J263 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC18.28■□□□□ 0.52
TRAV39A0A0B4J263 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC18.28■□□□□ 0.52
TRAV39A0A0B4J263 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV39A0A0B4J263 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRAV39A0A0B4J263 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRAV39A0A0B4J263 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
TRAV39A0A0B4J263 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
TRAV39A0A0B4J263 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRAV39A0A0B4J263 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC18.27■□□□□ 0.52
TRAV39A0A0B4J263 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC18.27■□□□□ 0.52
TRAV39A0A0B4J263 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC18.27■□□□□ 0.52
TRAV39A0A0B4J263 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
TRAV39A0A0B4J263 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
TRAV39A0A0B4J263 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.51
TRAV39A0A0B4J263 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms