Protein–RNA interactions for Protein: Q9H9Y2

RPF1, Ribosome production factor 1, humanhuman

Known RBP Predictions only

Length 349 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPF1Q9H9Y2 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
RPF1Q9H9Y2 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
RPF1Q9H9Y2 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
RPF1Q9H9Y2 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
RPF1Q9H9Y2 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC23.85■■□□□ 1.41
RPF1Q9H9Y2 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
RPF1Q9H9Y2 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
RPF1Q9H9Y2 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
RPF1Q9H9Y2 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
RPF1Q9H9Y2 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC23.85■■□□□ 1.41
RPF1Q9H9Y2 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC23.85■■□□□ 1.41
RPF1Q9H9Y2 AC068587.7-201ENST00000641602 218 ntBASIC23.85■■□□□ 1.41
RPF1Q9H9Y2 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
RPF1Q9H9Y2 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
RPF1Q9H9Y2 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
RPF1Q9H9Y2 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC23.84■■□□□ 1.41
RPF1Q9H9Y2 EI24-211ENST00000534546 1544 ntTSL 2 BASIC23.84■■□□□ 1.41
RPF1Q9H9Y2 AL031602.1-201ENST00000633169 911 ntBASIC23.84■■□□□ 1.41
RPF1Q9H9Y2 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC23.84■■□□□ 1.41
RPF1Q9H9Y2 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
RPF1Q9H9Y2 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC23.84■■□□□ 1.41
RPF1Q9H9Y2 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC23.83■■□□□ 1.41
RPF1Q9H9Y2 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC23.83■■□□□ 1.41
RPF1Q9H9Y2 RHOF-204ENST00000537265 699 ntTSL 2 BASIC23.83■■□□□ 1.41
RPF1Q9H9Y2 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
RPF1Q9H9Y2 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
RPF1Q9H9Y2 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
RPF1Q9H9Y2 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
RPF1Q9H9Y2 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
RPF1Q9H9Y2 CASK-201ENST00000378154 2494 ntTSL 5 BASIC23.82■■□□□ 1.4
RPF1Q9H9Y2 IRS3P-201ENST00000223076 1006 ntBASIC23.82■■□□□ 1.4
RPF1Q9H9Y2 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
RPF1Q9H9Y2 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
RPF1Q9H9Y2 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC23.82■■□□□ 1.4
RPF1Q9H9Y2 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
RPF1Q9H9Y2 LGR4-203ENST00000480977 492 ntTSL 2 BASIC23.82■■□□□ 1.4
RPF1Q9H9Y2 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
RPF1Q9H9Y2 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
RPF1Q9H9Y2 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
RPF1Q9H9Y2 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
RPF1Q9H9Y2 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
RPF1Q9H9Y2 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC23.82■■□□□ 1.4
RPF1Q9H9Y2 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RPF1Q9H9Y2 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC23.81■■□□□ 1.4
RPF1Q9H9Y2 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC23.81■■□□□ 1.4
RPF1Q9H9Y2 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC23.81■■□□□ 1.4
RPF1Q9H9Y2 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RPF1Q9H9Y2 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
RPF1Q9H9Y2 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC23.81■■□□□ 1.4
RPF1Q9H9Y2 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RPF1Q9H9Y2 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RPF1Q9H9Y2 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RPF1Q9H9Y2 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC23.8■■□□□ 1.4
RPF1Q9H9Y2 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
RPF1Q9H9Y2 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
RPF1Q9H9Y2 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC23.8■■□□□ 1.4
RPF1Q9H9Y2 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
RPF1Q9H9Y2 AC087239.1-201ENST00000622671 572 ntBASIC23.8■■□□□ 1.4
RPF1Q9H9Y2 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
RPF1Q9H9Y2 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC23.8■■□□□ 1.4
RPF1Q9H9Y2 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC23.8■■□□□ 1.4
RPF1Q9H9Y2 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
RPF1Q9H9Y2 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RPF1Q9H9Y2 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RPF1Q9H9Y2 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
RPF1Q9H9Y2 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC23.79■■□□□ 1.4
RPF1Q9H9Y2 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC23.79■■□□□ 1.4
RPF1Q9H9Y2 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC23.79■■□□□ 1.4
RPF1Q9H9Y2 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
RPF1Q9H9Y2 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
RPF1Q9H9Y2 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC23.79■■□□□ 1.4
RPF1Q9H9Y2 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RPF1Q9H9Y2 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC23.78■■□□□ 1.4
RPF1Q9H9Y2 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RPF1Q9H9Y2 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
RPF1Q9H9Y2 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RPF1Q9H9Y2 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RPF1Q9H9Y2 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RPF1Q9H9Y2 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
RPF1Q9H9Y2 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RPF1Q9H9Y2 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RPF1Q9H9Y2 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC23.78■■□□□ 1.4
RPF1Q9H9Y2 GCA-201ENST00000233612 1694 ntTSL 2 BASIC23.78■■□□□ 1.4
RPF1Q9H9Y2 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RPF1Q9H9Y2 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
RPF1Q9H9Y2 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC23.78■■□□□ 1.4
RPF1Q9H9Y2 USP45-205ENST00000472914 1617 ntTSL 5 BASIC23.77■■□□□ 1.4
RPF1Q9H9Y2 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RPF1Q9H9Y2 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC23.77■■□□□ 1.4
RPF1Q9H9Y2 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
RPF1Q9H9Y2 AC010141.3-201ENST00000456659 717 ntBASIC23.77■■□□□ 1.4
RPF1Q9H9Y2 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC23.77■■□□□ 1.4
RPF1Q9H9Y2 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC23.77■■□□□ 1.4
RPF1Q9H9Y2 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RPF1Q9H9Y2 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RPF1Q9H9Y2 LINC01960-201ENST00000563759 1884 ntBASIC23.77■■□□□ 1.4
RPF1Q9H9Y2 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC23.76■■□□□ 1.39
RPF1Q9H9Y2 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC23.76■■□□□ 1.39
RPF1Q9H9Y2 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RPF1Q9H9Y2 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms