Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC19.31■□□□□ 0.68
LIME1Q9H400 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIME1Q9H400 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC19.3■□□□□ 0.68
LIME1Q9H400 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC19.3■□□□□ 0.68
LIME1Q9H400 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.3■□□□□ 0.68
LIME1Q9H400 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.3■□□□□ 0.68
LIME1Q9H400 AC012414.1-201ENST00000556676 535 ntBASIC19.3■□□□□ 0.68
LIME1Q9H400 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIME1Q9H400 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.3■□□□□ 0.68
LIME1Q9H400 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
LIME1Q9H400 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIME1Q9H400 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIME1Q9H400 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC19.3■□□□□ 0.68
LIME1Q9H400 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC19.3■□□□□ 0.68
LIME1Q9H400 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIME1Q9H400 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
LIME1Q9H400 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIME1Q9H400 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LIME1Q9H400 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIME1Q9H400 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
LIME1Q9H400 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
LIME1Q9H400 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LIME1Q9H400 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIME1Q9H400 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIME1Q9H400 MIR572-201ENST00000384983 95 ntBASIC19.29■□□□□ 0.68
LIME1Q9H400 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC19.29■□□□□ 0.68
LIME1Q9H400 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.29■□□□□ 0.68
LIME1Q9H400 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LIME1Q9H400 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIME1Q9H400 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LIME1Q9H400 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LIME1Q9H400 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIME1Q9H400 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIME1Q9H400 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIME1Q9H400 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIME1Q9H400 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC19.28■□□□□ 0.68
LIME1Q9H400 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIME1Q9H400 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIME1Q9H400 IGHV3-19-201ENST00000521488 291 ntBASIC19.28■□□□□ 0.68
LIME1Q9H400 KRT18P14-201ENST00000534205 1250 ntBASIC19.28■□□□□ 0.68
LIME1Q9H400 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC19.28■□□□□ 0.68
LIME1Q9H400 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
LIME1Q9H400 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC19.28■□□□□ 0.68
LIME1Q9H400 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.28■□□□□ 0.68
LIME1Q9H400 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIME1Q9H400 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIME1Q9H400 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIME1Q9H400 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIME1Q9H400 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
LIME1Q9H400 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIME1Q9H400 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC19.27■□□□□ 0.68
LIME1Q9H400 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIME1Q9H400 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.27■□□□□ 0.68
LIME1Q9H400 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.27■□□□□ 0.68
LIME1Q9H400 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC19.27■□□□□ 0.68
LIME1Q9H400 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.27■□□□□ 0.68
LIME1Q9H400 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIME1Q9H400 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIME1Q9H400 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
LIME1Q9H400 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIME1Q9H400 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
LIME1Q9H400 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
LIME1Q9H400 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
LIME1Q9H400 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
LIME1Q9H400 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
LIME1Q9H400 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIME1Q9H400 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIME1Q9H400 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC19.26■□□□□ 0.67
LIME1Q9H400 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
LIME1Q9H400 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.26■□□□□ 0.67
LIME1Q9H400 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIME1Q9H400 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.26■□□□□ 0.67
LIME1Q9H400 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LIME1Q9H400 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC19.26■□□□□ 0.67
LIME1Q9H400 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
LIME1Q9H400 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIME1Q9H400 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19.25■□□□□ 0.67
LIME1Q9H400 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIME1Q9H400 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIME1Q9H400 GALC-202ENST00000393568 2054 ntTSL 2 BASIC19.25■□□□□ 0.67
LIME1Q9H400 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
LIME1Q9H400 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIME1Q9H400 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.25■□□□□ 0.67
LIME1Q9H400 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
LIME1Q9H400 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
LIME1Q9H400 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIME1Q9H400 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIME1Q9H400 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC19.24■□□□□ 0.67
LIME1Q9H400 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
LIME1Q9H400 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIME1Q9H400 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIME1Q9H400 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIME1Q9H400 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC19.24■□□□□ 0.67
LIME1Q9H400 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.24■□□□□ 0.67
LIME1Q9H400 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.24■□□□□ 0.67
LIME1Q9H400 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC19.24■□□□□ 0.67
LIME1Q9H400 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIME1Q9H400 AL354811.1-201ENST00000610286 706 ntBASIC19.24■□□□□ 0.67
LIME1Q9H400 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.24■□□□□ 0.67
LIME1Q9H400 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms