Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
VPS13AQ96RL7 AL121832.2-201ENST00000610979 668 ntBASIC22.05■■□□□ 1.12
VPS13AQ96RL7 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC22.05■■□□□ 1.12
VPS13AQ96RL7 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
VPS13AQ96RL7 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
VPS13AQ96RL7 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
VPS13AQ96RL7 AF201337.1-201ENST00000520239 748 ntBASIC22.04■■□□□ 1.12
VPS13AQ96RL7 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC22.04■■□□□ 1.12
VPS13AQ96RL7 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC22.04■■□□□ 1.12
VPS13AQ96RL7 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
VPS13AQ96RL7 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
VPS13AQ96RL7 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC22.04■■□□□ 1.12
VPS13AQ96RL7 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
VPS13AQ96RL7 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC22.03■■□□□ 1.12
VPS13AQ96RL7 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC22.03■■□□□ 1.12
VPS13AQ96RL7 AC231657.2-201ENST00000624556 255 ntBASIC22.03■■□□□ 1.12
VPS13AQ96RL7 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
VPS13AQ96RL7 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
VPS13AQ96RL7 PPP1R14BP2-201ENST00000426284 444 ntBASIC22.03■■□□□ 1.12
VPS13AQ96RL7 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC22.03■■□□□ 1.12
VPS13AQ96RL7 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC22.03■■□□□ 1.12
VPS13AQ96RL7 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC22.03■■□□□ 1.12
VPS13AQ96RL7 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
VPS13AQ96RL7 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC22.03■■□□□ 1.12
VPS13AQ96RL7 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
VPS13AQ96RL7 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
VPS13AQ96RL7 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC22.03■■□□□ 1.12
VPS13AQ96RL7 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC22.03■■□□□ 1.12
VPS13AQ96RL7 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
VPS13AQ96RL7 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC22.03■■□□□ 1.12
VPS13AQ96RL7 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
VPS13AQ96RL7 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC22.02■■□□□ 1.12
VPS13AQ96RL7 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
VPS13AQ96RL7 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
VPS13AQ96RL7 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC22.02■■□□□ 1.12
VPS13AQ96RL7 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC22.02■■□□□ 1.12
VPS13AQ96RL7 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
VPS13AQ96RL7 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
VPS13AQ96RL7 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC22.02■■□□□ 1.12
VPS13AQ96RL7 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC22.02■■□□□ 1.12
VPS13AQ96RL7 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC22.02■■□□□ 1.12
VPS13AQ96RL7 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC22.02■■□□□ 1.12
VPS13AQ96RL7 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC22.02■■□□□ 1.12
VPS13AQ96RL7 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC22.02■■□□□ 1.12
VPS13AQ96RL7 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
VPS13AQ96RL7 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC22.01■■□□□ 1.11
VPS13AQ96RL7 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC22.01■■□□□ 1.11
VPS13AQ96RL7 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC22.01■■□□□ 1.11
VPS13AQ96RL7 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
VPS13AQ96RL7 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC22.01■■□□□ 1.11
VPS13AQ96RL7 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC22.01■■□□□ 1.11
VPS13AQ96RL7 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC22.01■■□□□ 1.11
VPS13AQ96RL7 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
VPS13AQ96RL7 MARS-234ENST00000630571 216 ntTSL 5 BASIC22.01■■□□□ 1.11
VPS13AQ96RL7 MARS-235ENST00000630803 183 ntTSL 3 BASIC22.01■■□□□ 1.11
VPS13AQ96RL7 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
VPS13AQ96RL7 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
VPS13AQ96RL7 HLA-L-211ENST00000482052 1765 ntBASIC22.01■■□□□ 1.11
VPS13AQ96RL7 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
VPS13AQ96RL7 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
VPS13AQ96RL7 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC22■■□□□ 1.11
VPS13AQ96RL7 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
VPS13AQ96RL7 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
VPS13AQ96RL7 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
VPS13AQ96RL7 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
VPS13AQ96RL7 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC22■■□□□ 1.11
VPS13AQ96RL7 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC22■■□□□ 1.11
VPS13AQ96RL7 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC22■■□□□ 1.11
VPS13AQ96RL7 AC083880.1-201ENST00000608266 535 ntBASIC22■■□□□ 1.11
VPS13AQ96RL7 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC22■■□□□ 1.11
VPS13AQ96RL7 AP006294.2-201ENST00000641667 209 ntBASIC21.99■■□□□ 1.11
VPS13AQ96RL7 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
VPS13AQ96RL7 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
VPS13AQ96RL7 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
VPS13AQ96RL7 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
VPS13AQ96RL7 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
VPS13AQ96RL7 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
VPS13AQ96RL7 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.99■■□□□ 1.11
VPS13AQ96RL7 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC21.99■■□□□ 1.11
VPS13AQ96RL7 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.99■■□□□ 1.11
VPS13AQ96RL7 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.99■■□□□ 1.11
VPS13AQ96RL7 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.99■■□□□ 1.11
VPS13AQ96RL7 ALDH1A3-203ENST00000557963 1670 ntBASIC21.99■■□□□ 1.11
VPS13AQ96RL7 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
VPS13AQ96RL7 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
VPS13AQ96RL7 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
VPS13AQ96RL7 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.99■■□□□ 1.11
VPS13AQ96RL7 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.98■■□□□ 1.11
VPS13AQ96RL7 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.98■■□□□ 1.11
VPS13AQ96RL7 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.98■■□□□ 1.11
VPS13AQ96RL7 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC21.98■■□□□ 1.11
VPS13AQ96RL7 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
VPS13AQ96RL7 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
VPS13AQ96RL7 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
VPS13AQ96RL7 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
VPS13AQ96RL7 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
VPS13AQ96RL7 ECEL1P3-201ENST00000427961 737 ntBASIC21.97■■□□□ 1.11
VPS13AQ96RL7 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.97■■□□□ 1.11
VPS13AQ96RL7 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.97■■□□□ 1.11
VPS13AQ96RL7 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.97■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms