Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 AF131216.4-201ENST00000638924 1588 ntBASIC20.4■□□□□ 0.86
RFX4Q33E94 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.4■□□□□ 0.86
RFX4Q33E94 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RFX4Q33E94 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RFX4Q33E94 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.86
RFX4Q33E94 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
RFX4Q33E94 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RFX4Q33E94 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.39■□□□□ 0.86
RFX4Q33E94 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
RFX4Q33E94 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RFX4Q33E94 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.39■□□□□ 0.85
RFX4Q33E94 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RFX4Q33E94 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RFX4Q33E94 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC20.39■□□□□ 0.85
RFX4Q33E94 PVT1_1.1-201ENST00000615125 194 ntBASIC20.39■□□□□ 0.85
RFX4Q33E94 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RFX4Q33E94 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.39■□□□□ 0.85
RFX4Q33E94 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.39■□□□□ 0.85
RFX4Q33E94 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.39■□□□□ 0.85
RFX4Q33E94 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.39■□□□□ 0.85
RFX4Q33E94 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RFX4Q33E94 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RFX4Q33E94 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.38■□□□□ 0.85
RFX4Q33E94 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.38■□□□□ 0.85
RFX4Q33E94 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RFX4Q33E94 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.38■□□□□ 0.85
RFX4Q33E94 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RFX4Q33E94 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RFX4Q33E94 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RFX4Q33E94 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC20.38■□□□□ 0.85
RFX4Q33E94 THA1P-201ENST00000590384 1145 ntBASIC20.38■□□□□ 0.85
RFX4Q33E94 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.38■□□□□ 0.85
RFX4Q33E94 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.38■□□□□ 0.85
RFX4Q33E94 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
RFX4Q33E94 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.38■□□□□ 0.85
RFX4Q33E94 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RFX4Q33E94 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RFX4Q33E94 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RFX4Q33E94 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
RFX4Q33E94 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RFX4Q33E94 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RFX4Q33E94 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RFX4Q33E94 MIR4281-201ENST00000580852 62 ntBASIC20.37■□□□□ 0.85
RFX4Q33E94 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
RFX4Q33E94 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RFX4Q33E94 FAM99A-202ENST00000538190 1989 ntBASIC20.37■□□□□ 0.85
RFX4Q33E94 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RFX4Q33E94 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RFX4Q33E94 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
RFX4Q33E94 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RFX4Q33E94 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RFX4Q33E94 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
RFX4Q33E94 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.36■□□□□ 0.85
RFX4Q33E94 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RFX4Q33E94 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.36■□□□□ 0.85
RFX4Q33E94 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.36■□□□□ 0.85
RFX4Q33E94 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.36■□□□□ 0.85
RFX4Q33E94 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC20.36■□□□□ 0.85
RFX4Q33E94 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
RFX4Q33E94 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
RFX4Q33E94 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
RFX4Q33E94 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
RFX4Q33E94 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.35■□□□□ 0.85
RFX4Q33E94 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RFX4Q33E94 AC004448.1-201ENST00000458332 883 ntBASIC20.35■□□□□ 0.85
RFX4Q33E94 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RFX4Q33E94 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RFX4Q33E94 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RFX4Q33E94 AC010542.4-201ENST00000563151 1910 ntBASIC20.35■□□□□ 0.85
RFX4Q33E94 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.35■□□□□ 0.85
RFX4Q33E94 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RFX4Q33E94 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RFX4Q33E94 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.34■□□□□ 0.85
RFX4Q33E94 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
RFX4Q33E94 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
RFX4Q33E94 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RFX4Q33E94 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.34■□□□□ 0.85
RFX4Q33E94 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
RFX4Q33E94 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RFX4Q33E94 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.34■□□□□ 0.85
RFX4Q33E94 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RFX4Q33E94 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.34■□□□□ 0.85
RFX4Q33E94 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
RFX4Q33E94 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.85
RFX4Q33E94 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RFX4Q33E94 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.33■□□□□ 0.85
RFX4Q33E94 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
RFX4Q33E94 TSPY13P-201ENST00000338964 914 ntBASIC20.33■□□□□ 0.85
RFX4Q33E94 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.33■□□□□ 0.85
RFX4Q33E94 AC010980.1-201ENST00000587192 1142 ntBASIC20.33■□□□□ 0.85
RFX4Q33E94 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.33■□□□□ 0.85
RFX4Q33E94 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
RFX4Q33E94 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RFX4Q33E94 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
RFX4Q33E94 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RFX4Q33E94 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.32■□□□□ 0.84
RFX4Q33E94 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
RFX4Q33E94 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
RFX4Q33E94 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.32■□□□□ 0.84
RFX4Q33E94 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms