Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
PCDH1Q08174 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.2■□□□□ 0.98
PCDH1Q08174 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.2■□□□□ 0.98
PCDH1Q08174 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDH1Q08174 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.2■□□□□ 0.98
PCDH1Q08174 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDH1Q08174 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDH1Q08174 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDH1Q08174 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDH1Q08174 AC133637.1-201ENST00000624115 1537 ntBASIC21.19■□□□□ 0.98
PCDH1Q08174 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
PCDH1Q08174 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
PCDH1Q08174 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDH1Q08174 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
PCDH1Q08174 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.19■□□□□ 0.98
PCDH1Q08174 LINC00526-201ENST00000581067 1875 ntBASIC21.19■□□□□ 0.98
PCDH1Q08174 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.19■□□□□ 0.98
PCDH1Q08174 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PCDH1Q08174 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
PCDH1Q08174 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PCDH1Q08174 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDH1Q08174 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.18■□□□□ 0.98
PCDH1Q08174 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDH1Q08174 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PCDH1Q08174 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDH1Q08174 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
PCDH1Q08174 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDH1Q08174 MIR3181-201ENST00000578512 73 ntBASIC21.18■□□□□ 0.98
PCDH1Q08174 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDH1Q08174 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDH1Q08174 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDH1Q08174 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
PCDH1Q08174 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDH1Q08174 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDH1Q08174 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDH1Q08174 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDH1Q08174 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDH1Q08174 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PCDH1Q08174 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PCDH1Q08174 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PCDH1Q08174 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDH1Q08174 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.17■□□□□ 0.98
PCDH1Q08174 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.17■□□□□ 0.98
PCDH1Q08174 MIR4466-201ENST00000606121 54 ntBASIC21.17■□□□□ 0.98
PCDH1Q08174 pRNA.6-201ENST00000610482 90 ntBASIC21.17■□□□□ 0.98
PCDH1Q08174 pRNA.5-201ENST00000612139 90 ntBASIC21.17■□□□□ 0.98
PCDH1Q08174 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.17■□□□□ 0.98
PCDH1Q08174 pRNA.11-201ENST00000618423 90 ntBASIC21.17■□□□□ 0.98
PCDH1Q08174 pRNA.13-201ENST00000619112 90 ntBASIC21.17■□□□□ 0.98
PCDH1Q08174 AL031602.1-201ENST00000633169 911 ntBASIC21.17■□□□□ 0.98
PCDH1Q08174 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
PCDH1Q08174 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
PCDH1Q08174 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDH1Q08174 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.17■□□□□ 0.98
PCDH1Q08174 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PCDH1Q08174 AC139530.1-201ENST00000575312 1977 ntBASIC21.17■□□□□ 0.98
PCDH1Q08174 CLDN5-201ENST00000403084 2357 ntBASIC21.17■□□□□ 0.98
PCDH1Q08174 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.17■□□□□ 0.98
PCDH1Q08174 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDH1Q08174 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDH1Q08174 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.16■□□□□ 0.98
PCDH1Q08174 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.16■□□□□ 0.98
PCDH1Q08174 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.16■□□□□ 0.98
PCDH1Q08174 AL138724.1-201ENST00000606771 1088 ntBASIC21.16■□□□□ 0.98
PCDH1Q08174 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDH1Q08174 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDH1Q08174 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDH1Q08174 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDH1Q08174 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDH1Q08174 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDH1Q08174 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.15■□□□□ 0.98
PCDH1Q08174 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
PCDH1Q08174 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC21.15■□□□□ 0.98
PCDH1Q08174 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
PCDH1Q08174 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.15■□□□□ 0.98
PCDH1Q08174 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.15■□□□□ 0.98
PCDH1Q08174 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21.15■□□□□ 0.98
PCDH1Q08174 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.15■□□□□ 0.98
PCDH1Q08174 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.15■□□□□ 0.98
PCDH1Q08174 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.15■□□□□ 0.98
PCDH1Q08174 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
PCDH1Q08174 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
PCDH1Q08174 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.14■□□□□ 0.98
PCDH1Q08174 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
PCDH1Q08174 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDH1Q08174 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.14■□□□□ 0.97
PCDH1Q08174 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDH1Q08174 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.14■□□□□ 0.97
PCDH1Q08174 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.14■□□□□ 0.97
PCDH1Q08174 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.14■□□□□ 0.97
PCDH1Q08174 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.14■□□□□ 0.97
PCDH1Q08174 AC137767.1-201ENST00000602918 1920 ntBASIC21.14■□□□□ 0.97
PCDH1Q08174 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.14■□□□□ 0.97
PCDH1Q08174 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PCDH1Q08174 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDH1Q08174 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDH1Q08174 AC131281.2-201ENST00000520478 145 ntBASIC21.13■□□□□ 0.97
PCDH1Q08174 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.13■□□□□ 0.97
PCDH1Q08174 DUX4L19-201ENST00000557448 1267 ntBASIC21.13■□□□□ 0.97
PCDH1Q08174 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms