Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA3P55318 AC087742.1-201ENST00000575880 1738 ntBASIC16.47■□□□□ 0.23
FOXA3P55318 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA3P55318 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
FOXA3P55318 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA3P55318 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA3P55318 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
FOXA3P55318 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA3P55318 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA3P55318 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC16.46■□□□□ 0.23
FOXA3P55318 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC16.46■□□□□ 0.23
FOXA3P55318 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA3P55318 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA3P55318 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA3P55318 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
FOXA3P55318 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA3P55318 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA3P55318 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA3P55318 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA3P55318 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
FOXA3P55318 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
FOXA3P55318 AC131274.2-201ENST00000580697 1507 ntBASIC16.45■□□□□ 0.22
FOXA3P55318 AC092667.1-201ENST00000434301 2586 ntBASIC16.45■□□□□ 0.22
FOXA3P55318 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC16.45■□□□□ 0.22
FOXA3P55318 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA3P55318 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA3P55318 RNF165-205ENST00000588679 2904 ntBASIC16.45■□□□□ 0.22
FOXA3P55318 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA3P55318 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA3P55318 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC16.45■□□□□ 0.22
FOXA3P55318 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA3P55318 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC16.45■□□□□ 0.22
FOXA3P55318 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA3P55318 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
FOXA3P55318 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA3P55318 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA3P55318 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC16.44■□□□□ 0.22
FOXA3P55318 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA3P55318 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA3P55318 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA3P55318 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA3P55318 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA3P55318 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA3P55318 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA3P55318 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
FOXA3P55318 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC16.44■□□□□ 0.22
FOXA3P55318 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA3P55318 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA3P55318 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA3P55318 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA3P55318 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA3P55318 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA3P55318 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
FOXA3P55318 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA3P55318 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA3P55318 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA3P55318 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA3P55318 AL353803.4-201ENST00000565882 1934 ntBASIC16.44■□□□□ 0.22
FOXA3P55318 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA3P55318 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA3P55318 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA3P55318 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA3P55318 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
FOXA3P55318 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA3P55318 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA3P55318 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC16.44■□□□□ 0.22
FOXA3P55318 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC16.43■□□□□ 0.22
FOXA3P55318 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA3P55318 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA3P55318 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
FOXA3P55318 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
FOXA3P55318 FAM99A-202ENST00000538190 1989 ntBASIC16.43■□□□□ 0.22
FOXA3P55318 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA3P55318 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA3P55318 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC16.43■□□□□ 0.22
FOXA3P55318 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA3P55318 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC16.42■□□□□ 0.22
FOXA3P55318 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
FOXA3P55318 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC16.42■□□□□ 0.22
FOXA3P55318 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA3P55318 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA3P55318 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA3P55318 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC16.42■□□□□ 0.22
FOXA3P55318 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA3P55318 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA3P55318 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC16.42■□□□□ 0.22
FOXA3P55318 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA3P55318 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA3P55318 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC16.41■□□□□ 0.22
FOXA3P55318 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA3P55318 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA3P55318 AC010542.4-201ENST00000563151 1910 ntBASIC16.41■□□□□ 0.22
FOXA3P55318 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC16.41■□□□□ 0.22
FOXA3P55318 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA3P55318 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA3P55318 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
FOXA3P55318 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA3P55318 RPS2P7-201ENST00000447334 885 ntBASIC16.41■□□□□ 0.22
FOXA3P55318 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA3P55318 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms