Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HMGN4O00479 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGN4O00479 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HMGN4O00479 KRT16P3-201ENST00000439127 1283 ntBASIC20.49■□□□□ 0.87
HMGN4O00479 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HMGN4O00479 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGN4O00479 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HMGN4O00479 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGN4O00479 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGN4O00479 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGN4O00479 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HMGN4O00479 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
HMGN4O00479 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.48■□□□□ 0.87
HMGN4O00479 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC20.48■□□□□ 0.87
HMGN4O00479 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGN4O00479 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGN4O00479 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.48■□□□□ 0.87
HMGN4O00479 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGN4O00479 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.48■□□□□ 0.87
HMGN4O00479 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.48■□□□□ 0.87
HMGN4O00479 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.48■□□□□ 0.87
HMGN4O00479 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.48■□□□□ 0.87
HMGN4O00479 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HMGN4O00479 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.48■□□□□ 0.87
HMGN4O00479 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HMGN4O00479 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.48■□□□□ 0.87
HMGN4O00479 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGN4O00479 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
HMGN4O00479 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGN4O00479 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGN4O00479 C11orf96-202ENST00000528572 1834 ntBASIC20.48■□□□□ 0.87
HMGN4O00479 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGN4O00479 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGN4O00479 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGN4O00479 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGN4O00479 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGN4O00479 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
HMGN4O00479 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.47■□□□□ 0.87
HMGN4O00479 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.47■□□□□ 0.87
HMGN4O00479 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGN4O00479 AL499627.2-201ENST00000606283 725 ntBASIC20.47■□□□□ 0.87
HMGN4O00479 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.47■□□□□ 0.87
HMGN4O00479 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGN4O00479 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.47■□□□□ 0.87
HMGN4O00479 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.47■□□□□ 0.87
HMGN4O00479 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.47■□□□□ 0.87
HMGN4O00479 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGN4O00479 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGN4O00479 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.46■□□□□ 0.87
HMGN4O00479 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.46■□□□□ 0.87
HMGN4O00479 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.46■□□□□ 0.87
HMGN4O00479 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGN4O00479 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGN4O00479 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HMGN4O00479 GUSBP5-201ENST00000418136 578 ntBASIC20.46■□□□□ 0.87
HMGN4O00479 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.46■□□□□ 0.87
HMGN4O00479 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HMGN4O00479 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.46■□□□□ 0.87
HMGN4O00479 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
HMGN4O00479 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGN4O00479 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGN4O00479 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
HMGN4O00479 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGN4O00479 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.46■□□□□ 0.87
HMGN4O00479 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.46■□□□□ 0.87
HMGN4O00479 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGN4O00479 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.45■□□□□ 0.86
HMGN4O00479 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGN4O00479 AC137767.1-201ENST00000602918 1920 ntBASIC20.45■□□□□ 0.86
HMGN4O00479 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.45■□□□□ 0.86
HMGN4O00479 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGN4O00479 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGN4O00479 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
HMGN4O00479 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGN4O00479 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.45■□□□□ 0.86
HMGN4O00479 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.45■□□□□ 0.86
HMGN4O00479 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGN4O00479 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.45■□□□□ 0.86
HMGN4O00479 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGN4O00479 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGN4O00479 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.45■□□□□ 0.86
HMGN4O00479 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGN4O00479 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
HMGN4O00479 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGN4O00479 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGN4O00479 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
HMGN4O00479 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.44■□□□□ 0.86
HMGN4O00479 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGN4O00479 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.44■□□□□ 0.86
HMGN4O00479 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
HMGN4O00479 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.44■□□□□ 0.86
HMGN4O00479 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGN4O00479 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGN4O00479 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.43■□□□□ 0.86
HMGN4O00479 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
HMGN4O00479 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.43■□□□□ 0.86
HMGN4O00479 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGN4O00479 AC241377.3-202ENST00000626088 1088 ntBASIC20.43■□□□□ 0.86
HMGN4O00479 AC241585.3-202ENST00000628937 1088 ntBASIC20.43■□□□□ 0.86
HMGN4O00479 AC245100.8-202ENST00000629247 1058 ntBASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms