Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
TRIM49D1C9J1S8 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC22.01■■□□□ 1.11
TRIM49D1C9J1S8 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TRIM49D1C9J1S8 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC22.01■■□□□ 1.11
TRIM49D1C9J1S8 AC005703.6-201ENST00000623265 1329 ntBASIC22.01■■□□□ 1.11
TRIM49D1C9J1S8 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
TRIM49D1C9J1S8 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC22.01■■□□□ 1.11
TRIM49D1C9J1S8 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TRIM49D1C9J1S8 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TRIM49D1C9J1S8 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC22■■□□□ 1.11
TRIM49D1C9J1S8 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
TRIM49D1C9J1S8 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC22■■□□□ 1.11
TRIM49D1C9J1S8 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC22■■□□□ 1.11
TRIM49D1C9J1S8 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC22■■□□□ 1.11
TRIM49D1C9J1S8 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC22■■□□□ 1.11
TRIM49D1C9J1S8 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC22■■□□□ 1.11
TRIM49D1C9J1S8 LINC01960-201ENST00000563759 1884 ntBASIC22■■□□□ 1.11
TRIM49D1C9J1S8 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC22■■□□□ 1.11
TRIM49D1C9J1S8 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TRIM49D1C9J1S8 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC22■■□□□ 1.11
TRIM49D1C9J1S8 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
TRIM49D1C9J1S8 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
TRIM49D1C9J1S8 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.99■■□□□ 1.11
TRIM49D1C9J1S8 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC21.99■■□□□ 1.11
TRIM49D1C9J1S8 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.99■■□□□ 1.11
TRIM49D1C9J1S8 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.99■■□□□ 1.11
TRIM49D1C9J1S8 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
TRIM49D1C9J1S8 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.98■■□□□ 1.11
TRIM49D1C9J1S8 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TRIM49D1C9J1S8 YBX1P4-201ENST00000392794 808 ntBASIC21.98■■□□□ 1.11
TRIM49D1C9J1S8 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.98■■□□□ 1.11
TRIM49D1C9J1S8 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.98■■□□□ 1.11
TRIM49D1C9J1S8 AL033527.3-201ENST00000566366 1196 ntBASIC21.98■■□□□ 1.11
TRIM49D1C9J1S8 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.98■■□□□ 1.11
TRIM49D1C9J1S8 AC012354.3-201ENST00000623734 483 ntBASIC21.98■■□□□ 1.11
TRIM49D1C9J1S8 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TRIM49D1C9J1S8 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
TRIM49D1C9J1S8 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
TRIM49D1C9J1S8 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TRIM49D1C9J1S8 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TRIM49D1C9J1S8 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TRIM49D1C9J1S8 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
TRIM49D1C9J1S8 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.97■■□□□ 1.11
TRIM49D1C9J1S8 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TRIM49D1C9J1S8 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TRIM49D1C9J1S8 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TRIM49D1C9J1S8 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.97■■□□□ 1.11
TRIM49D1C9J1S8 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC21.97■■□□□ 1.11
TRIM49D1C9J1S8 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.97■■□□□ 1.11
TRIM49D1C9J1S8 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.97■■□□□ 1.11
TRIM49D1C9J1S8 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
TRIM49D1C9J1S8 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TRIM49D1C9J1S8 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
TRIM49D1C9J1S8 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TRIM49D1C9J1S8 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.97■■□□□ 1.11
TRIM49D1C9J1S8 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.97■■□□□ 1.11
TRIM49D1C9J1S8 MIR6722-201ENST00000617286 78 ntBASIC21.97■■□□□ 1.11
TRIM49D1C9J1S8 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.97■■□□□ 1.11
TRIM49D1C9J1S8 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.97■■□□□ 1.11
TRIM49D1C9J1S8 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TRIM49D1C9J1S8 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.97■■□□□ 1.11
TRIM49D1C9J1S8 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
TRIM49D1C9J1S8 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
TRIM49D1C9J1S8 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TRIM49D1C9J1S8 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.96■■□□□ 1.11
TRIM49D1C9J1S8 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
TRIM49D1C9J1S8 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
TRIM49D1C9J1S8 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TRIM49D1C9J1S8 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.96■■□□□ 1.11
TRIM49D1C9J1S8 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.96■■□□□ 1.11
TRIM49D1C9J1S8 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
TRIM49D1C9J1S8 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.96■■□□□ 1.11
TRIM49D1C9J1S8 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
TRIM49D1C9J1S8 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.96■■□□□ 1.11
TRIM49D1C9J1S8 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
TRIM49D1C9J1S8 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.96■■□□□ 1.11
TRIM49D1C9J1S8 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.95■■□□□ 1.11
TRIM49D1C9J1S8 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
TRIM49D1C9J1S8 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
TRIM49D1C9J1S8 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
TRIM49D1C9J1S8 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.95■■□□□ 1.1
TRIM49D1C9J1S8 AC009086.3-201ENST00000623486 1008 ntBASIC21.95■■□□□ 1.1
TRIM49D1C9J1S8 AC010542.4-201ENST00000563151 1910 ntBASIC21.95■■□□□ 1.1
TRIM49D1C9J1S8 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
TRIM49D1C9J1S8 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
TRIM49D1C9J1S8 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
TRIM49D1C9J1S8 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
TRIM49D1C9J1S8 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.94■■□□□ 1.1
TRIM49D1C9J1S8 FAM99A-202ENST00000538190 1989 ntBASIC21.94■■□□□ 1.1
TRIM49D1C9J1S8 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
TRIM49D1C9J1S8 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.94■■□□□ 1.1
TRIM49D1C9J1S8 AC026310.3-201ENST00000625186 2373 ntBASIC21.94■■□□□ 1.1
TRIM49D1C9J1S8 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
TRIM49D1C9J1S8 DUX4L4-201ENST00000566884 1269 ntBASIC21.94■■□□□ 1.1
TRIM49D1C9J1S8 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRIM49D1C9J1S8 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRIM49D1C9J1S8 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRIM49D1C9J1S8 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
TRIM49D1C9J1S8 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
TRIM49D1C9J1S8 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms