Protein–RNA interactions for Protein: Q96S21

RAB40C, Ras-related protein Rab-40C, humanhuman

Predictions only

Length 281 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40CQ96S21 CCDC88A-207ENST00000436346 9811 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
RAB40CQ96S21 PIWIL1-201ENST00000245255 3897 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RAB40CQ96S21 PSAP-201ENST00000394934 2830 ntAPPRIS ALT1 TSL 5 BASIC10.66□□□□□ -0.7
RAB40CQ96S21 SOX13-203ENST00000367204 3587 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RAB40CQ96S21 NUP62-208ENST00000596217 3590 ntAPPRIS P1 TSL 2 BASIC10.66□□□□□ -0.7
RAB40CQ96S21 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RAB40CQ96S21 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RAB40CQ96S21 PAX5-203ENST00000377847 996 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
RAB40CQ96S21 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
RAB40CQ96S21 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
RAB40CQ96S21 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
RAB40CQ96S21 PPIL3-205ENST00000409449 756 ntTSL 5 BASIC10.66□□□□□ -0.7
RAB40CQ96S21 BANF1P3-201ENST00000412556 261 ntBASIC10.66□□□□□ -0.7
RAB40CQ96S21 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC10.66□□□□□ -0.7
RAB40CQ96S21 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC10.66□□□□□ -0.7
RAB40CQ96S21 NKAIN1P1-201ENST00000435754 582 ntBASIC10.66□□□□□ -0.7
RAB40CQ96S21 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
RAB40CQ96S21 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC10.66□□□□□ -0.7
RAB40CQ96S21 UBTFL5-201ENST00000443682 1191 ntBASIC10.66□□□□□ -0.7
RAB40CQ96S21 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC10.66□□□□□ -0.7
RAB40CQ96S21 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC10.66□□□□□ -0.7
RAB40CQ96S21 AC079250.1-201ENST00000456046 531 ntBASIC10.66□□□□□ -0.7
RAB40CQ96S21 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC10.66□□□□□ -0.7
RAB40CQ96S21 RPL18AP3-201ENST00000462885 528 ntBASIC10.66□□□□□ -0.7
RAB40CQ96S21 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
RAB40CQ96S21 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC10.66□□□□□ -0.7
RAB40CQ96S21 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC10.66□□□□□ -0.7
RAB40CQ96S21 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC10.66□□□□□ -0.7
RAB40CQ96S21 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC10.66□□□□□ -0.7
RAB40CQ96S21 AP001120.3-201ENST00000585729 489 ntBASIC10.66□□□□□ -0.7
RAB40CQ96S21 AP005264.5-201ENST00000590066 467 ntBASIC10.66□□□□□ -0.7
RAB40CQ96S21 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC10.66□□□□□ -0.7
RAB40CQ96S21 LINC00643-207ENST00000637212 734 ntBASIC10.66□□□□□ -0.7
RAB40CQ96S21 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RAB40CQ96S21 STMN1-206ENST00000455785 1504 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RAB40CQ96S21 ZNF814-215ENST00000614383 2006 ntTSL 5 BASIC10.66□□□□□ -0.7
RAB40CQ96S21 SOX30-201ENST00000265007 3265 ntAPPRIS P4 TSL 1 (best) BASIC10.66□□□□□ -0.7
RAB40CQ96S21 AL583810.2-201ENST00000556430 3254 ntBASIC10.66□□□□□ -0.7
RAB40CQ96S21 CMIP-208ENST00000566462 3512 ntTSL 4 BASIC10.66□□□□□ -0.7
RAB40CQ96S21 BCL2L11-223ENST00000622612 4995 ntTSL 5 BASIC10.66□□□□□ -0.7
RAB40CQ96S21 FGFR1OP-207ENST00000622353 3451 ntTSL 2 BASIC10.66□□□□□ -0.7
RAB40CQ96S21 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
RAB40CQ96S21 ZSCAN5DP-201ENST00000600684 1488 ntBASIC10.66□□□□□ -0.7
RAB40CQ96S21 RBM15-205ENST00000618772 3431 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
RAB40CQ96S21 APPBP2-201ENST00000083182 6478 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RAB40CQ96S21 THUMPD3-206ENST00000452837 2877 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RAB40CQ96S21 SNAI1-201ENST00000244050 1686 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RAB40CQ96S21 AL590483.3-201ENST00000623669 3580 ntBASIC10.66□□□□□ -0.7
RAB40CQ96S21 CD33-201ENST00000262262 1444 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
RAB40CQ96S21 UBXN4-201ENST00000272638 4006 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RAB40CQ96S21 FAM46A-202ENST00000369754 5664 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
RAB40CQ96S21 KIAA0368-202ENST00000338205 7078 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
RAB40CQ96S21 POLA2-201ENST00000265465 3744 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RAB40CQ96S21 LRRC8E-206ENST00000618098 3743 ntAPPRIS P1 TSL 3 BASIC10.66□□□□□ -0.7
RAB40CQ96S21 BTNL8-202ENST00000340184 2071 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
RAB40CQ96S21 MRFAP1L1-201ENST00000320848 1593 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
RAB40CQ96S21 IL1R2-201ENST00000332549 1578 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
RAB40CQ96S21 SNX12-207ENST00000622277 2422 ntAPPRIS P3 TSL 4 BASIC10.65□□□□□ -0.7
RAB40CQ96S21 TIPARP-202ENST00000461166 4181 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
RAB40CQ96S21 IRS4-201ENST00000372129 3928 ntAPPRIS P1 BASIC10.65□□□□□ -0.7
RAB40CQ96S21 CETP-202ENST00000379780 1537 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
RAB40CQ96S21 ECHDC1-209ENST00000454591 1515 ntTSL 2 BASIC10.65□□□□□ -0.7
RAB40CQ96S21 TPRX1-203ENST00000543508 1526 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
RAB40CQ96S21 STIM1-209ENST00000527651 2184 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
RAB40CQ96S21 BARD1-212ENST00000617164 5449 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
RAB40CQ96S21 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
RAB40CQ96S21 ZNF749-201ENST00000334181 2587 ntAPPRIS P1 TSL 2 BASIC10.65□□□□□ -0.7
RAB40CQ96S21 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
RAB40CQ96S21 MT1F-201ENST00000334350 690 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
RAB40CQ96S21 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
RAB40CQ96S21 SCGB1C1-201ENST00000342878 431 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
RAB40CQ96S21 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
RAB40CQ96S21 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
RAB40CQ96S21 Z97192.3-201ENST00000420902 2975 ntTSL 2 BASIC10.65□□□□□ -0.7
RAB40CQ96S21 GRPEL2P1-201ENST00000453145 339 ntBASIC10.65□□□□□ -0.7
RAB40CQ96S21 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC10.65□□□□□ -0.7
RAB40CQ96S21 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
RAB40CQ96S21 AC114947.1-202ENST00000514136 344 ntBASIC10.65□□□□□ -0.7
RAB40CQ96S21 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC10.65□□□□□ -0.7
RAB40CQ96S21 AP001258.2-201ENST00000529891 490 ntBASIC10.65□□□□□ -0.7
RAB40CQ96S21 AC026583.1-201ENST00000561310 569 ntTSL 4 BASIC10.65□□□□□ -0.7
RAB40CQ96S21 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC10.65□□□□□ -0.7
RAB40CQ96S21 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC10.65□□□□□ -0.7
RAB40CQ96S21 MIR4527HG-201ENST00000586905 675 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
RAB40CQ96S21 FAM90A28P-201ENST00000596881 489 ntTSL 5 BASIC10.65□□□□□ -0.7
RAB40CQ96S21 AL451050.2-201ENST00000606967 682 ntBASIC10.65□□□□□ -0.7
RAB40CQ96S21 DPY19L1-201ENST00000310974 4870 ntAPPRIS P2 TSL 1 (best) BASIC10.65□□□□□ -0.7
RAB40CQ96S21 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
RAB40CQ96S21 TXLNG-202ENST00000398155 3998 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
RAB40CQ96S21 AL031714.1-201ENST00000567829 2926 ntTSL 5 BASIC10.65□□□□□ -0.7
RAB40CQ96S21 RHOH-217ENST00000610353 2268 ntAPPRIS P1 TSL 4 BASIC10.65□□□□□ -0.7
RAB40CQ96S21 AC008609.1-202ENST00000501818 2686 ntTSL 2 BASIC10.65□□□□□ -0.7
RAB40CQ96S21 AC122688.3-201ENST00000623804 3467 ntBASIC10.65□□□□□ -0.7
RAB40CQ96S21 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC10.65□□□□□ -0.7
RAB40CQ96S21 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
RAB40CQ96S21 AP000897.1-201ENST00000584036 1613 ntBASIC10.65□□□□□ -0.7
RAB40CQ96S21 RBMX-201ENST00000320676 2012 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
RAB40CQ96S21 TCOF1-205ENST00000439160 4644 ntAPPRIS ALT2 TSL 5 BASIC10.65□□□□□ -0.71
RAB40CQ96S21 NR1D1-201ENST00000246672 2772 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
RAB40CQ96S21 ARNTL-202ENST00000401424 2788 ntTSL 1 (best) BASIC10.65□□□□□ -0.71
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms