Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NKX3-1Q99801 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NKX3-1Q99801 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NKX3-1Q99801 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
NKX3-1Q99801 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NKX3-1Q99801 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NKX3-1Q99801 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.16■□□□□ 0.66
NKX3-1Q99801 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.16■□□□□ 0.66
NKX3-1Q99801 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NKX3-1Q99801 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC19.16■□□□□ 0.66
NKX3-1Q99801 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC19.16■□□□□ 0.66
NKX3-1Q99801 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC19.16■□□□□ 0.66
NKX3-1Q99801 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC19.16■□□□□ 0.66
NKX3-1Q99801 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NKX3-1Q99801 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
NKX3-1Q99801 FBXW4P1-201ENST00000426721 2239 ntBASIC19.16■□□□□ 0.66
NKX3-1Q99801 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.16■□□□□ 0.66
NKX3-1Q99801 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NKX3-1Q99801 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
NKX3-1Q99801 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NKX3-1Q99801 AC137767.1-201ENST00000602918 1920 ntBASIC19.15■□□□□ 0.66
NKX3-1Q99801 ESRRAP2-201ENST00000418437 1549 ntBASIC19.15■□□□□ 0.66
NKX3-1Q99801 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC19.15■□□□□ 0.66
NKX3-1Q99801 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
NKX3-1Q99801 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NKX3-1Q99801 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NKX3-1Q99801 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC19.15■□□□□ 0.66
NKX3-1Q99801 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NKX3-1Q99801 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.15■□□□□ 0.66
NKX3-1Q99801 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NKX3-1Q99801 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NKX3-1Q99801 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
NKX3-1Q99801 AC087742.1-201ENST00000575880 1738 ntBASIC19.14■□□□□ 0.66
NKX3-1Q99801 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
NKX3-1Q99801 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NKX3-1Q99801 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.14■□□□□ 0.65
NKX3-1Q99801 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NKX3-1Q99801 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
NKX3-1Q99801 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NKX3-1Q99801 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NKX3-1Q99801 AC103834.1-201ENST00000520383 144 ntBASIC19.14■□□□□ 0.65
NKX3-1Q99801 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NKX3-1Q99801 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NKX3-1Q99801 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.14■□□□□ 0.65
NKX3-1Q99801 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
NKX3-1Q99801 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NKX3-1Q99801 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
NKX3-1Q99801 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
NKX3-1Q99801 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NKX3-1Q99801 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
NKX3-1Q99801 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
NKX3-1Q99801 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
NKX3-1Q99801 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NKX3-1Q99801 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
NKX3-1Q99801 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
NKX3-1Q99801 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.13■□□□□ 0.65
NKX3-1Q99801 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
NKX3-1Q99801 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.13■□□□□ 0.65
NKX3-1Q99801 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.13■□□□□ 0.65
NKX3-1Q99801 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NKX3-1Q99801 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
NKX3-1Q99801 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
NKX3-1Q99801 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.12■□□□□ 0.65
NKX3-1Q99801 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC19.12■□□□□ 0.65
NKX3-1Q99801 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NKX3-1Q99801 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
NKX3-1Q99801 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NKX3-1Q99801 AL451085.2-201ENST00000605085 799 ntBASIC19.12■□□□□ 0.65
NKX3-1Q99801 SNX5-217ENST00000606557 1087 ntBASIC19.12■□□□□ 0.65
NKX3-1Q99801 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC19.12■□□□□ 0.65
NKX3-1Q99801 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NKX3-1Q99801 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
NKX3-1Q99801 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
NKX3-1Q99801 C11orf96-202ENST00000528572 1834 ntBASIC19.11■□□□□ 0.65
NKX3-1Q99801 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
NKX3-1Q99801 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
NKX3-1Q99801 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
NKX3-1Q99801 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
NKX3-1Q99801 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
NKX3-1Q99801 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC19.11■□□□□ 0.65
NKX3-1Q99801 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC19.11■□□□□ 0.65
NKX3-1Q99801 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
NKX3-1Q99801 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
NKX3-1Q99801 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
NKX3-1Q99801 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
NKX3-1Q99801 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
NKX3-1Q99801 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC19.1■□□□□ 0.65
NKX3-1Q99801 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.1■□□□□ 0.65
NKX3-1Q99801 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC19.1■□□□□ 0.65
NKX3-1Q99801 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.1■□□□□ 0.65
NKX3-1Q99801 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NKX3-1Q99801 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NKX3-1Q99801 REST-206ENST00000612429 1376 ntTSL 5 BASIC19.1■□□□□ 0.65
NKX3-1Q99801 REST-207ENST00000616975 1370 ntTSL 5 BASIC19.1■□□□□ 0.65
NKX3-1Q99801 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
NKX3-1Q99801 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
NKX3-1Q99801 AC092053.2-201ENST00000640557 1818 ntBASIC19.1■□□□□ 0.65
NKX3-1Q99801 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NKX3-1Q99801 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
NKX3-1Q99801 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms