Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
USP54Q70EL1 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
USP54Q70EL1 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC29.91■■■□□ 2.38
USP54Q70EL1 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
USP54Q70EL1 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
USP54Q70EL1 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
USP54Q70EL1 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
USP54Q70EL1 H19-210ENST00000439725 1929 ntTSL 2 BASIC29.9■■■□□ 2.38
USP54Q70EL1 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC29.9■■■□□ 2.38
USP54Q70EL1 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
USP54Q70EL1 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
USP54Q70EL1 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
USP54Q70EL1 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC29.9■■■□□ 2.38
USP54Q70EL1 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
USP54Q70EL1 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
USP54Q70EL1 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
USP54Q70EL1 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC29.89■■■□□ 2.38
USP54Q70EL1 RARA-203ENST00000394086 2008 ntTSL 2 BASIC29.89■■■□□ 2.38
USP54Q70EL1 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC29.89■■■□□ 2.37
USP54Q70EL1 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC29.88■■■□□ 2.37
USP54Q70EL1 NTF6G-201ENST00000591094 616 ntBASIC29.88■■■□□ 2.37
USP54Q70EL1 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
USP54Q70EL1 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC29.88■■■□□ 2.37
USP54Q70EL1 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC29.88■■■□□ 2.37
USP54Q70EL1 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC29.87■■■□□ 2.37
USP54Q70EL1 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC29.87■■■□□ 2.37
USP54Q70EL1 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC29.87■■■□□ 2.37
USP54Q70EL1 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
USP54Q70EL1 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC29.87■■■□□ 2.37
USP54Q70EL1 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
USP54Q70EL1 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
USP54Q70EL1 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
USP54Q70EL1 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC29.86■■■□□ 2.37
USP54Q70EL1 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
USP54Q70EL1 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC29.86■■■□□ 2.37
USP54Q70EL1 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC29.86■■■□□ 2.37
USP54Q70EL1 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC29.85■■■□□ 2.37
USP54Q70EL1 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
USP54Q70EL1 SMUG1P1-201ENST00000590640 811 ntBASIC29.85■■■□□ 2.37
USP54Q70EL1 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC29.85■■■□□ 2.37
USP54Q70EL1 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC29.85■■■□□ 2.37
USP54Q70EL1 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC29.85■■■□□ 2.37
USP54Q70EL1 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC29.85■■■□□ 2.37
USP54Q70EL1 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC29.85■■■□□ 2.37
USP54Q70EL1 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
USP54Q70EL1 ID1-201ENST00000376105 1233 ntBASIC29.85■■■□□ 2.37
USP54Q70EL1 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC29.85■■■□□ 2.37
USP54Q70EL1 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC29.85■■■□□ 2.37
USP54Q70EL1 DENND3-207ENST00000518347 850 ntTSL 2 BASIC29.85■■■□□ 2.37
USP54Q70EL1 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC29.85■■■□□ 2.37
USP54Q70EL1 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC29.85■■■□□ 2.37
USP54Q70EL1 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC29.85■■■□□ 2.37
USP54Q70EL1 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
USP54Q70EL1 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC29.84■■■□□ 2.37
USP54Q70EL1 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
USP54Q70EL1 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC29.84■■■□□ 2.37
USP54Q70EL1 WWOX-218ENST00000627394 894 ntTSL 5 BASIC29.84■■■□□ 2.37
USP54Q70EL1 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
USP54Q70EL1 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
USP54Q70EL1 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC29.83■■■□□ 2.37
USP54Q70EL1 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC29.83■■■□□ 2.37
USP54Q70EL1 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC29.83■■■□□ 2.37
USP54Q70EL1 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC29.83■■■□□ 2.37
USP54Q70EL1 EI24-211ENST00000534546 1544 ntTSL 2 BASIC29.83■■■□□ 2.37
USP54Q70EL1 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC29.83■■■□□ 2.37
USP54Q70EL1 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
USP54Q70EL1 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC29.82■■■□□ 2.36
USP54Q70EL1 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC29.82■■■□□ 2.36
USP54Q70EL1 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC29.82■■■□□ 2.36
USP54Q70EL1 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC29.82■■■□□ 2.36
USP54Q70EL1 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
USP54Q70EL1 AP004607.4-201ENST00000530158 1459 ntBASIC29.82■■■□□ 2.36
USP54Q70EL1 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
USP54Q70EL1 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
USP54Q70EL1 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC29.82■■■□□ 2.36
USP54Q70EL1 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC29.82■■■□□ 2.36
USP54Q70EL1 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
USP54Q70EL1 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
USP54Q70EL1 GALNS-213ENST00000569433 723 ntTSL 3 BASIC29.82■■■□□ 2.36
USP54Q70EL1 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC29.82■■■□□ 2.36
USP54Q70EL1 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
USP54Q70EL1 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC29.81■■■□□ 2.36
USP54Q70EL1 AC004812.2-201ENST00000611079 2094 ntBASIC29.81■■■□□ 2.36
USP54Q70EL1 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
USP54Q70EL1 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
USP54Q70EL1 AC004854.2-201ENST00000608450 1441 ntBASIC29.81■■■□□ 2.36
USP54Q70EL1 AL139125.2-201ENST00000623134 1869 ntBASIC29.81■■■□□ 2.36
USP54Q70EL1 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
USP54Q70EL1 HSCB-202ENST00000398941 955 ntTSL 2 BASIC29.81■■■□□ 2.36
USP54Q70EL1 DBI-210ENST00000542275 757 ntTSL 5 BASIC29.81■■■□□ 2.36
USP54Q70EL1 AC087239.1-201ENST00000622671 572 ntBASIC29.81■■■□□ 2.36
USP54Q70EL1 AC073111.5-205ENST00000641717 521 ntBASIC29.81■■■□□ 2.36
USP54Q70EL1 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC29.8■■■□□ 2.36
USP54Q70EL1 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
USP54Q70EL1 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
USP54Q70EL1 GXYLT1P2-201ENST00000433312 1230 ntBASIC29.79■■■□□ 2.36
USP54Q70EL1 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC29.79■■■□□ 2.36
USP54Q70EL1 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC29.79■■■□□ 2.36
USP54Q70EL1 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
USP54Q70EL1 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms