Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC20.83■□□□□ 0.93
LRIF1Q5T3J3 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRIF1Q5T3J3 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.83■□□□□ 0.93
LRIF1Q5T3J3 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.83■□□□□ 0.93
LRIF1Q5T3J3 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.83■□□□□ 0.93
LRIF1Q5T3J3 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.83■□□□□ 0.93
LRIF1Q5T3J3 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.83■□□□□ 0.92
LRIF1Q5T3J3 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
LRIF1Q5T3J3 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
LRIF1Q5T3J3 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
LRIF1Q5T3J3 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
LRIF1Q5T3J3 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
LRIF1Q5T3J3 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.92
LRIF1Q5T3J3 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRIF1Q5T3J3 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
LRIF1Q5T3J3 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LRIF1Q5T3J3 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRIF1Q5T3J3 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LRIF1Q5T3J3 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRIF1Q5T3J3 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
LRIF1Q5T3J3 AL031848.2-201ENST00000607670 837 ntBASIC20.82■□□□□ 0.92
LRIF1Q5T3J3 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRIF1Q5T3J3 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.82■□□□□ 0.92
LRIF1Q5T3J3 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRIF1Q5T3J3 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRIF1Q5T3J3 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.82■□□□□ 0.92
LRIF1Q5T3J3 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
LRIF1Q5T3J3 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LRIF1Q5T3J3 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.81■□□□□ 0.92
LRIF1Q5T3J3 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRIF1Q5T3J3 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LRIF1Q5T3J3 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRIF1Q5T3J3 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRIF1Q5T3J3 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRIF1Q5T3J3 AC009086.3-201ENST00000623486 1008 ntBASIC20.81■□□□□ 0.92
LRIF1Q5T3J3 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRIF1Q5T3J3 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
LRIF1Q5T3J3 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.8■□□□□ 0.92
LRIF1Q5T3J3 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
LRIF1Q5T3J3 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LRIF1Q5T3J3 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
LRIF1Q5T3J3 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LRIF1Q5T3J3 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
LRIF1Q5T3J3 LINC01960-201ENST00000563759 1884 ntBASIC20.8■□□□□ 0.92
LRIF1Q5T3J3 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
LRIF1Q5T3J3 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LRIF1Q5T3J3 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.8■□□□□ 0.92
LRIF1Q5T3J3 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
LRIF1Q5T3J3 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LRIF1Q5T3J3 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LRIF1Q5T3J3 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
LRIF1Q5T3J3 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LRIF1Q5T3J3 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LRIF1Q5T3J3 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LRIF1Q5T3J3 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LRIF1Q5T3J3 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.79■□□□□ 0.92
LRIF1Q5T3J3 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
LRIF1Q5T3J3 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
LRIF1Q5T3J3 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LRIF1Q5T3J3 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.79■□□□□ 0.92
LRIF1Q5T3J3 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
LRIF1Q5T3J3 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LRIF1Q5T3J3 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
LRIF1Q5T3J3 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.79■□□□□ 0.92
LRIF1Q5T3J3 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LRIF1Q5T3J3 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.79■□□□□ 0.92
LRIF1Q5T3J3 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LRIF1Q5T3J3 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LRIF1Q5T3J3 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LRIF1Q5T3J3 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.78■□□□□ 0.92
LRIF1Q5T3J3 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.78■□□□□ 0.92
LRIF1Q5T3J3 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.78■□□□□ 0.92
LRIF1Q5T3J3 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.78■□□□□ 0.92
LRIF1Q5T3J3 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.78■□□□□ 0.92
LRIF1Q5T3J3 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC20.78■□□□□ 0.92
LRIF1Q5T3J3 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.78■□□□□ 0.92
LRIF1Q5T3J3 FBXW4P1-201ENST00000426721 2239 ntBASIC20.78■□□□□ 0.92
LRIF1Q5T3J3 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.78■□□□□ 0.92
LRIF1Q5T3J3 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.78■□□□□ 0.92
LRIF1Q5T3J3 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
LRIF1Q5T3J3 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LRIF1Q5T3J3 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.78■□□□□ 0.92
LRIF1Q5T3J3 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.78■□□□□ 0.92
LRIF1Q5T3J3 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LRIF1Q5T3J3 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LRIF1Q5T3J3 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
LRIF1Q5T3J3 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LRIF1Q5T3J3 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.77■□□□□ 0.92
LRIF1Q5T3J3 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LRIF1Q5T3J3 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.77■□□□□ 0.92
LRIF1Q5T3J3 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
LRIF1Q5T3J3 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.76■□□□□ 0.91
LRIF1Q5T3J3 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
LRIF1Q5T3J3 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.76■□□□□ 0.91
LRIF1Q5T3J3 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LRIF1Q5T3J3 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
LRIF1Q5T3J3 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.76■□□□□ 0.91
LRIF1Q5T3J3 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LRIF1Q5T3J3 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.76■□□□□ 0.91
LRIF1Q5T3J3 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms