Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
CDH12P55289 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CDH12P55289 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.52■□□□□ 0.87
CDH12P55289 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CDH12P55289 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.51■□□□□ 0.87
CDH12P55289 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH12P55289 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH12P55289 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH12P55289 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.51■□□□□ 0.87
CDH12P55289 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.51■□□□□ 0.87
CDH12P55289 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CDH12P55289 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH12P55289 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
CDH12P55289 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.51■□□□□ 0.87
CDH12P55289 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.5■□□□□ 0.87
CDH12P55289 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.5■□□□□ 0.87
CDH12P55289 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.5■□□□□ 0.87
CDH12P55289 AC021242.3-201ENST00000607598 1377 ntBASIC20.5■□□□□ 0.87
CDH12P55289 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CDH12P55289 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
CDH12P55289 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH12P55289 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH12P55289 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CDH12P55289 C11orf96-202ENST00000528572 1834 ntBASIC20.5■□□□□ 0.87
CDH12P55289 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH12P55289 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CDH12P55289 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDH12P55289 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDH12P55289 AC080038.3-201ENST00000623346 1952 ntBASIC20.49■□□□□ 0.87
CDH12P55289 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDH12P55289 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.49■□□□□ 0.87
CDH12P55289 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.49■□□□□ 0.87
CDH12P55289 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.49■□□□□ 0.87
CDH12P55289 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.49■□□□□ 0.87
CDH12P55289 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.49■□□□□ 0.87
CDH12P55289 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CDH12P55289 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.49■□□□□ 0.87
CDH12P55289 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CDH12P55289 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.49■□□□□ 0.87
CDH12P55289 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
CDH12P55289 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CDH12P55289 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH12P55289 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
CDH12P55289 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CDH12P55289 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH12P55289 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CDH12P55289 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH12P55289 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CDH12P55289 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.48■□□□□ 0.87
CDH12P55289 BX664725.1-201ENST00000438252 379 ntBASIC20.48■□□□□ 0.87
CDH12P55289 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CDH12P55289 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH12P55289 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH12P55289 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH12P55289 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH12P55289 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH12P55289 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
CDH12P55289 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CDH12P55289 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CDH12P55289 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.47■□□□□ 0.87
CDH12P55289 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CDH12P55289 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.47■□□□□ 0.87
CDH12P55289 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.47■□□□□ 0.87
CDH12P55289 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
CDH12P55289 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CDH12P55289 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CDH12P55289 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CDH12P55289 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CDH12P55289 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
CDH12P55289 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CDH12P55289 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDH12P55289 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.46■□□□□ 0.87
CDH12P55289 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDH12P55289 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDH12P55289 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CDH12P55289 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.46■□□□□ 0.87
CDH12P55289 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.46■□□□□ 0.87
CDH12P55289 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.46■□□□□ 0.87
CDH12P55289 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.46■□□□□ 0.87
CDH12P55289 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
CDH12P55289 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDH12P55289 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDH12P55289 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.46■□□□□ 0.87
CDH12P55289 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDH12P55289 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CDH12P55289 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDH12P55289 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.45■□□□□ 0.86
CDH12P55289 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.45■□□□□ 0.86
CDH12P55289 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDH12P55289 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDH12P55289 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CDH12P55289 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDH12P55289 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDH12P55289 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDH12P55289 MIR6722-201ENST00000617286 78 ntBASIC20.45■□□□□ 0.86
CDH12P55289 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.45■□□□□ 0.86
CDH12P55289 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CDH12P55289 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CDH12P55289 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CDH12P55289 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms