Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CDX1P47902 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC17.84■□□□□ 0.45
CDX1P47902 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC17.83■□□□□ 0.45
CDX1P47902 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
CDX1P47902 AC131274.2-201ENST00000580697 1507 ntBASIC17.83■□□□□ 0.45
CDX1P47902 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC17.83■□□□□ 0.45
CDX1P47902 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CDX1P47902 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
CDX1P47902 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC17.83■□□□□ 0.45
CDX1P47902 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC17.83■□□□□ 0.45
CDX1P47902 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.83■□□□□ 0.44
CDX1P47902 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC17.83■□□□□ 0.44
CDX1P47902 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CDX1P47902 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CDX1P47902 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC17.83■□□□□ 0.44
CDX1P47902 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC17.83■□□□□ 0.44
CDX1P47902 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CDX1P47902 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
CDX1P47902 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC17.83■□□□□ 0.44
CDX1P47902 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CDX1P47902 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CDX1P47902 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CDX1P47902 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDX1P47902 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
CDX1P47902 AL161729.1-201ENST00000604104 1402 ntBASIC17.82■□□□□ 0.44
CDX1P47902 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC17.82■□□□□ 0.44
CDX1P47902 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CDX1P47902 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDX1P47902 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CDX1P47902 PEMT-206ENST00000435340 960 ntTSL 5 BASIC17.82■□□□□ 0.44
CDX1P47902 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC17.82■□□□□ 0.44
CDX1P47902 TRIR-202ENST00000588213 841 ntTSL 3 BASIC17.82■□□□□ 0.44
CDX1P47902 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC17.82■□□□□ 0.44
CDX1P47902 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDX1P47902 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDX1P47902 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDX1P47902 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDX1P47902 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC17.81■□□□□ 0.44
CDX1P47902 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDX1P47902 AC005703.6-201ENST00000623265 1329 ntBASIC17.81■□□□□ 0.44
CDX1P47902 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDX1P47902 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDX1P47902 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDX1P47902 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDX1P47902 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CDX1P47902 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC17.81■□□□□ 0.44
CDX1P47902 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC17.81■□□□□ 0.44
CDX1P47902 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
CDX1P47902 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDX1P47902 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CDX1P47902 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC17.81■□□□□ 0.44
CDX1P47902 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDX1P47902 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDX1P47902 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDX1P47902 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDX1P47902 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDX1P47902 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CDX1P47902 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDX1P47902 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CDX1P47902 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC17.8■□□□□ 0.44
CDX1P47902 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDX1P47902 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC17.8■□□□□ 0.44
CDX1P47902 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDX1P47902 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDX1P47902 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDX1P47902 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDX1P47902 AC131281.2-201ENST00000520478 145 ntBASIC17.8■□□□□ 0.44
CDX1P47902 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC17.8■□□□□ 0.44
CDX1P47902 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC17.8■□□□□ 0.44
CDX1P47902 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDX1P47902 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDX1P47902 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDX1P47902 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDX1P47902 REST-206ENST00000612429 1376 ntTSL 5 BASIC17.79■□□□□ 0.44
CDX1P47902 REST-207ENST00000616975 1370 ntTSL 5 BASIC17.79■□□□□ 0.44
CDX1P47902 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDX1P47902 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDX1P47902 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDX1P47902 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDX1P47902 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDX1P47902 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDX1P47902 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDX1P47902 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC17.79■□□□□ 0.44
CDX1P47902 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC17.79■□□□□ 0.44
CDX1P47902 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDX1P47902 LSR-203ENST00000360798 1963 ntTSL 2 BASIC17.79■□□□□ 0.44
CDX1P47902 HLA-L-211ENST00000482052 1765 ntBASIC17.79■□□□□ 0.44
CDX1P47902 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CDX1P47902 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDX1P47902 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC17.78■□□□□ 0.44
CDX1P47902 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDX1P47902 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDX1P47902 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC17.78■□□□□ 0.44
CDX1P47902 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDX1P47902 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CDX1P47902 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC17.78■□□□□ 0.44
CDX1P47902 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC17.78■□□□□ 0.44
CDX1P47902 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDX1P47902 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
CDX1P47902 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms