Protein–RNA interactions for Protein: P46779

RPL28, 60S ribosomal protein L28, humanhuman

Known RBP Predictions only

Length 137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28P46779 AC129492.7-201ENST00000622992 756 ntBASIC14.49□□□□□ -0.09
RPL28P46779 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC14.49□□□□□ -0.09
RPL28P46779 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
RPL28P46779 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC14.49□□□□□ -0.09
RPL28P46779 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
RPL28P46779 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
RPL28P46779 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
RPL28P46779 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC14.49□□□□□ -0.09
RPL28P46779 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC14.49□□□□□ -0.09
RPL28P46779 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
RPL28P46779 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
RPL28P46779 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
RPL28P46779 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RPL28P46779 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
RPL28P46779 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RPL28P46779 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RPL28P46779 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
RPL28P46779 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC14.48□□□□□ -0.09
RPL28P46779 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
RPL28P46779 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RPL28P46779 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
RPL28P46779 AC139795.1-202ENST00000500444 432 ntBASIC14.48□□□□□ -0.09
RPL28P46779 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
RPL28P46779 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
RPL28P46779 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RPL28P46779 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RPL28P46779 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
RPL28P46779 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RPL28P46779 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
RPL28P46779 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RPL28P46779 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC14.47□□□□□ -0.09
RPL28P46779 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
RPL28P46779 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RPL28P46779 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
RPL28P46779 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
RPL28P46779 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
RPL28P46779 AC087393.1-201ENST00000582896 145 ntBASIC14.47□□□□□ -0.09
RPL28P46779 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
RPL28P46779 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
RPL28P46779 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RPL28P46779 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
RPL28P46779 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
RPL28P46779 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
RPL28P46779 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
RPL28P46779 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
RPL28P46779 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
RPL28P46779 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
RPL28P46779 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC14.46□□□□□ -0.09
RPL28P46779 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
RPL28P46779 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC14.46□□□□□ -0.09
RPL28P46779 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
RPL28P46779 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
RPL28P46779 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
RPL28P46779 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC14.46□□□□□ -0.09
RPL28P46779 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC14.46□□□□□ -0.1
RPL28P46779 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
RPL28P46779 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
RPL28P46779 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
RPL28P46779 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.1
RPL28P46779 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
RPL28P46779 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
RPL28P46779 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
RPL28P46779 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
RPL28P46779 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RPL28P46779 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RPL28P46779 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RPL28P46779 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
RPL28P46779 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RPL28P46779 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RPL28P46779 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC14.45□□□□□ -0.1
RPL28P46779 SPCS2P3-201ENST00000500401 656 ntBASIC14.45□□□□□ -0.1
RPL28P46779 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC14.45□□□□□ -0.1
RPL28P46779 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
RPL28P46779 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
RPL28P46779 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RPL28P46779 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
RPL28P46779 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC14.45□□□□□ -0.1
RPL28P46779 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RPL28P46779 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RPL28P46779 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
RPL28P46779 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
RPL28P46779 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC14.44□□□□□ -0.1
RPL28P46779 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
RPL28P46779 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
RPL28P46779 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
RPL28P46779 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RPL28P46779 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RPL28P46779 AC079630.1-202ENST00000618127 1840 ntBASIC14.44□□□□□ -0.1
RPL28P46779 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RPL28P46779 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC14.44□□□□□ -0.1
RPL28P46779 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC14.44□□□□□ -0.1
RPL28P46779 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC14.44□□□□□ -0.1
RPL28P46779 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RPL28P46779 BHLHE23-202ENST00000612929 1109 ntBASIC14.44□□□□□ -0.1
RPL28P46779 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RPL28P46779 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
RPL28P46779 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RPL28P46779 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
RPL28P46779 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC14.44□□□□□ -0.1
RPL28P46779 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 11.8 ms