Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
HLA-DQA1P01909 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DQA1P01909 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC16.56■□□□□ 0.24
HLA-DQA1P01909 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DQA1P01909 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DQA1P01909 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DQA1P01909 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DQA1P01909 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
HLA-DQA1P01909 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
HLA-DQA1P01909 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC16.56■□□□□ 0.24
HLA-DQA1P01909 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DQA1P01909 AC080038.3-201ENST00000623346 1952 ntBASIC16.56■□□□□ 0.24
HLA-DQA1P01909 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DQA1P01909 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DQA1P01909 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DQA1P01909 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DQA1P01909 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DQA1P01909 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DQA1P01909 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DQA1P01909 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
HLA-DQA1P01909 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
HLA-DQA1P01909 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC16.55■□□□□ 0.24
HLA-DQA1P01909 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC16.55■□□□□ 0.24
HLA-DQA1P01909 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC16.55■□□□□ 0.24
HLA-DQA1P01909 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
HLA-DQA1P01909 RPS2-202ENST00000526522 924 ntTSL 2 BASIC16.55■□□□□ 0.24
HLA-DQA1P01909 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DQA1P01909 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
HLA-DQA1P01909 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DQA1P01909 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DQA1P01909 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DQA1P01909 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DQA1P01909 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DQA1P01909 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HLA-DQA1P01909 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HLA-DQA1P01909 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HLA-DQA1P01909 MBP-237ENST00000579129 1052 ntTSL 5 BASIC16.54■□□□□ 0.24
HLA-DQA1P01909 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC16.54■□□□□ 0.24
HLA-DQA1P01909 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
HLA-DQA1P01909 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HLA-DQA1P01909 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HLA-DQA1P01909 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HLA-DQA1P01909 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HLA-DQA1P01909 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
HLA-DQA1P01909 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
HLA-DQA1P01909 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC16.53■□□□□ 0.24
HLA-DQA1P01909 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC16.53■□□□□ 0.24
HLA-DQA1P01909 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC16.53■□□□□ 0.24
HLA-DQA1P01909 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HLA-DQA1P01909 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HLA-DQA1P01909 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC16.53■□□□□ 0.24
HLA-DQA1P01909 MIR639-201ENST00000384974 98 ntBASIC16.53■□□□□ 0.24
HLA-DQA1P01909 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HLA-DQA1P01909 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HLA-DQA1P01909 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
HLA-DQA1P01909 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC16.52■□□□□ 0.24
HLA-DQA1P01909 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DQA1P01909 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DQA1P01909 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
HLA-DQA1P01909 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DQA1P01909 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DQA1P01909 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC16.52■□□□□ 0.24
HLA-DQA1P01909 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DQA1P01909 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DQA1P01909 MED25-210ENST00000612854 801 ntTSL 5 BASIC16.52■□□□□ 0.24
HLA-DQA1P01909 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DQA1P01909 MED25-214ENST00000622402 642 ntTSL 5 BASIC16.52■□□□□ 0.24
HLA-DQA1P01909 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DQA1P01909 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DQA1P01909 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DQA1P01909 AC010542.4-201ENST00000563151 1910 ntBASIC16.52■□□□□ 0.23
HLA-DQA1P01909 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
HLA-DQA1P01909 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC16.52■□□□□ 0.23
HLA-DQA1P01909 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
HLA-DQA1P01909 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC16.52■□□□□ 0.23
HLA-DQA1P01909 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC16.52■□□□□ 0.23
HLA-DQA1P01909 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
HLA-DQA1P01909 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC16.52■□□□□ 0.23
HLA-DQA1P01909 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC16.52■□□□□ 0.23
HLA-DQA1P01909 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DQA1P01909 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC16.51■□□□□ 0.23
HLA-DQA1P01909 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DQA1P01909 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DQA1P01909 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DQA1P01909 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
HLA-DQA1P01909 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DQA1P01909 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DQA1P01909 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC16.51■□□□□ 0.23
HLA-DQA1P01909 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
HLA-DQA1P01909 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC16.51■□□□□ 0.23
HLA-DQA1P01909 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DQA1P01909 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
HLA-DQA1P01909 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms