Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
PCF11O94913 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
PCF11O94913 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC34.86■■■■□ 3.17
PCF11O94913 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC34.86■■■■□ 3.17
PCF11O94913 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC34.85■■■■□ 3.17
PCF11O94913 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC34.85■■■■□ 3.17
PCF11O94913 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC34.85■■■■□ 3.17
PCF11O94913 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC34.85■■■■□ 3.17
PCF11O94913 HLA-L-209ENST00000420110 1011 ntBASIC34.85■■■■□ 3.17
PCF11O94913 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC34.85■■■■□ 3.17
PCF11O94913 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC34.85■■■■□ 3.17
PCF11O94913 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC34.85■■■■□ 3.17
PCF11O94913 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
PCF11O94913 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
PCF11O94913 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC34.84■■■■□ 3.17
PCF11O94913 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC34.84■■■■□ 3.17
PCF11O94913 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC34.84■■■■□ 3.17
PCF11O94913 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC34.84■■■■□ 3.17
PCF11O94913 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC34.84■■■■□ 3.17
PCF11O94913 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC34.83■■■■□ 3.17
PCF11O94913 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC34.83■■■■□ 3.17
PCF11O94913 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC34.83■■■■□ 3.17
PCF11O94913 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC34.83■■■■□ 3.17
PCF11O94913 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC34.83■■■■□ 3.17
PCF11O94913 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC34.83■■■■□ 3.17
PCF11O94913 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC34.83■■■■□ 3.17
PCF11O94913 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
PCF11O94913 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC34.83■■■■□ 3.17
PCF11O94913 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC34.83■■■■□ 3.17
PCF11O94913 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC34.83■■■■□ 3.17
PCF11O94913 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC34.82■■■■□ 3.17
PCF11O94913 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC34.82■■■■□ 3.16
PCF11O94913 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC34.82■■■■□ 3.16
PCF11O94913 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC34.82■■■■□ 3.16
PCF11O94913 AC105233.4-201ENST00000642045 216 ntBASIC34.82■■■■□ 3.16
PCF11O94913 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC34.82■■■■□ 3.16
PCF11O94913 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC34.82■■■■□ 3.16
PCF11O94913 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC34.81■■■■□ 3.16
PCF11O94913 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC34.81■■■■□ 3.16
PCF11O94913 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC34.81■■■■□ 3.16
PCF11O94913 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC34.81■■■■□ 3.16
PCF11O94913 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC34.81■■■■□ 3.16
PCF11O94913 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC34.81■■■■□ 3.16
PCF11O94913 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC34.81■■■■□ 3.16
PCF11O94913 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC34.81■■■■□ 3.16
PCF11O94913 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC34.81■■■■□ 3.16
PCF11O94913 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC34.81■■■■□ 3.16
PCF11O94913 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
PCF11O94913 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC34.8■■■■□ 3.16
PCF11O94913 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC34.8■■■■□ 3.16
PCF11O94913 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC34.8■■■■□ 3.16
PCF11O94913 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC34.8■■■■□ 3.16
PCF11O94913 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC34.8■■■■□ 3.16
PCF11O94913 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC34.8■■■■□ 3.16
PCF11O94913 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
PCF11O94913 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC34.8■■■■□ 3.16
PCF11O94913 MPST-204ENST00000404393 1329 ntTSL 5 BASIC34.8■■■■□ 3.16
PCF11O94913 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC34.8■■■■□ 3.16
PCF11O94913 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC34.8■■■■□ 3.16
PCF11O94913 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC34.79■■■■□ 3.16
PCF11O94913 AC004911.1-201ENST00000416316 871 ntBASIC34.79■■■■□ 3.16
PCF11O94913 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC34.79■■■■□ 3.16
PCF11O94913 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
PCF11O94913 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
PCF11O94913 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC34.79■■■■□ 3.16
PCF11O94913 MFF-208ENST00000409616 1247 ntTSL 5 BASIC34.79■■■■□ 3.16
PCF11O94913 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC34.79■■■■□ 3.16
PCF11O94913 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC34.78■■■■□ 3.16
PCF11O94913 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC34.78■■■■□ 3.16
PCF11O94913 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC34.77■■■■□ 3.16
PCF11O94913 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC34.77■■■■□ 3.16
PCF11O94913 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC34.77■■■■□ 3.16
PCF11O94913 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC34.77■■■■□ 3.16
PCF11O94913 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC34.77■■■■□ 3.16
PCF11O94913 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC34.77■■■■□ 3.16
PCF11O94913 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC34.77■■■■□ 3.16
PCF11O94913 AL353803.4-201ENST00000565882 1934 ntBASIC34.77■■■■□ 3.16
PCF11O94913 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC34.77■■■■□ 3.16
PCF11O94913 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC34.76■■■■□ 3.16
PCF11O94913 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC34.76■■■■□ 3.16
PCF11O94913 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC34.76■■■■□ 3.16
PCF11O94913 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC34.76■■■■□ 3.15
PCF11O94913 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC34.76■■■■□ 3.15
PCF11O94913 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC34.76■■■■□ 3.15
PCF11O94913 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC34.75■■■■□ 3.15
PCF11O94913 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC34.74■■■■□ 3.15
PCF11O94913 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC34.74■■■■□ 3.15
PCF11O94913 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC34.74■■■■□ 3.15
PCF11O94913 EI24-211ENST00000534546 1544 ntTSL 2 BASIC34.73■■■■□ 3.15
PCF11O94913 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC34.73■■■■□ 3.15
PCF11O94913 RARA-203ENST00000394086 2008 ntTSL 2 BASIC34.73■■■■□ 3.15
PCF11O94913 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC34.73■■■■□ 3.15
PCF11O94913 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC34.73■■■■□ 3.15
PCF11O94913 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC34.73■■■■□ 3.15
PCF11O94913 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC34.73■■■■□ 3.15
PCF11O94913 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC34.72■■■■□ 3.15
PCF11O94913 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC34.72■■■■□ 3.15
PCF11O94913 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC34.72■■■■□ 3.15
PCF11O94913 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC34.72■■■■□ 3.15
PCF11O94913 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC34.72■■■■□ 3.15
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms