Protein–RNA interactions for Protein: O60500

NPHS1, Nephrin, humanhuman

Predictions only

Length 1,241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHS1O60500 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NPHS1O60500 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NPHS1O60500 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.54■■□□□ 1.04
NPHS1O60500 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
NPHS1O60500 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.54■■□□□ 1.04
NPHS1O60500 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.54■■□□□ 1.04
NPHS1O60500 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
NPHS1O60500 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
NPHS1O60500 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
NPHS1O60500 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHS1O60500 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NPHS1O60500 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHS1O60500 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHS1O60500 YBX1P4-201ENST00000392794 808 ntBASIC21.53■■□□□ 1.04
NPHS1O60500 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.53■■□□□ 1.04
NPHS1O60500 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.53■■□□□ 1.04
NPHS1O60500 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
NPHS1O60500 DUX4L4-201ENST00000566884 1269 ntBASIC21.53■■□□□ 1.04
NPHS1O60500 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC21.53■■□□□ 1.04
NPHS1O60500 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.53■■□□□ 1.04
NPHS1O60500 AC009086.3-201ENST00000623486 1008 ntBASIC21.53■■□□□ 1.04
NPHS1O60500 AC012354.3-201ENST00000623734 483 ntBASIC21.53■■□□□ 1.04
NPHS1O60500 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHS1O60500 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHS1O60500 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NPHS1O60500 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.53■■□□□ 1.04
NPHS1O60500 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHS1O60500 FBXW4P1-201ENST00000426721 2239 ntBASIC21.52■■□□□ 1.04
NPHS1O60500 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPHS1O60500 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPHS1O60500 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.52■■□□□ 1.04
NPHS1O60500 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NPHS1O60500 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
NPHS1O60500 LINC01960-201ENST00000563759 1884 ntBASIC21.52■■□□□ 1.03
NPHS1O60500 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
NPHS1O60500 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.51■■□□□ 1.03
NPHS1O60500 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHS1O60500 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHS1O60500 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHS1O60500 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.51■■□□□ 1.03
NPHS1O60500 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.51■■□□□ 1.03
NPHS1O60500 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
NPHS1O60500 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
NPHS1O60500 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
NPHS1O60500 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.51■■□□□ 1.03
NPHS1O60500 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHS1O60500 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHS1O60500 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
NPHS1O60500 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.5■■□□□ 1.03
NPHS1O60500 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHS1O60500 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHS1O60500 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
NPHS1O60500 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHS1O60500 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
NPHS1O60500 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHS1O60500 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.5■■□□□ 1.03
NPHS1O60500 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHS1O60500 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.5■■□□□ 1.03
NPHS1O60500 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21.5■■□□□ 1.03
NPHS1O60500 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHS1O60500 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.5■■□□□ 1.03
NPHS1O60500 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHS1O60500 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.5■■□□□ 1.03
NPHS1O60500 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHS1O60500 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHS1O60500 KRT8P33-201ENST00000508125 1423 ntBASIC21.49■■□□□ 1.03
NPHS1O60500 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.49■■□□□ 1.03
NPHS1O60500 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.49■■□□□ 1.03
NPHS1O60500 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
NPHS1O60500 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHS1O60500 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHS1O60500 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHS1O60500 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.49■■□□□ 1.03
NPHS1O60500 AC021242.3-201ENST00000607598 1377 ntBASIC21.48■■□□□ 1.03
NPHS1O60500 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NPHS1O60500 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NPHS1O60500 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.48■■□□□ 1.03
NPHS1O60500 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NPHS1O60500 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
NPHS1O60500 AL033527.3-201ENST00000566366 1196 ntBASIC21.48■■□□□ 1.03
NPHS1O60500 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.48■■□□□ 1.03
NPHS1O60500 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.48■■□□□ 1.03
NPHS1O60500 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
NPHS1O60500 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NPHS1O60500 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.48■■□□□ 1.03
NPHS1O60500 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
NPHS1O60500 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.48■■□□□ 1.03
NPHS1O60500 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
NPHS1O60500 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.47■■□□□ 1.03
NPHS1O60500 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.47■■□□□ 1.03
NPHS1O60500 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
NPHS1O60500 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
NPHS1O60500 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHS1O60500 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHS1O60500 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.47■■□□□ 1.03
NPHS1O60500 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
NPHS1O60500 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.47■■□□□ 1.03
NPHS1O60500 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC21.47■■□□□ 1.03
NPHS1O60500 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
NPHS1O60500 AL031848.2-201ENST00000607670 837 ntBASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms