Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HMGN4O00479 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
HMGN4O00479 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HMGN4O00479 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGN4O00479 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGN4O00479 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGN4O00479 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.56■□□□□ 0.88
HMGN4O00479 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.56■□□□□ 0.88
HMGN4O00479 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.56■□□□□ 0.88
HMGN4O00479 MIR6724-1-201ENST00000616420 92 ntBASIC20.56■□□□□ 0.88
HMGN4O00479 MIR6724-2-201ENST00000616483 92 ntBASIC20.56■□□□□ 0.88
HMGN4O00479 MIR6724-4-201ENST00000617390 92 ntBASIC20.56■□□□□ 0.88
HMGN4O00479 MIR6724-3-201ENST00000622482 92 ntBASIC20.56■□□□□ 0.88
HMGN4O00479 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HMGN4O00479 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
HMGN4O00479 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.56■□□□□ 0.88
HMGN4O00479 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGN4O00479 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGN4O00479 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGN4O00479 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGN4O00479 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGN4O00479 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGN4O00479 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
HMGN4O00479 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.55■□□□□ 0.88
HMGN4O00479 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGN4O00479 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HMGN4O00479 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.55■□□□□ 0.88
HMGN4O00479 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGN4O00479 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HMGN4O00479 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGN4O00479 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
HMGN4O00479 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGN4O00479 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
HMGN4O00479 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGN4O00479 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
HMGN4O00479 AC004687.1-201ENST00000579003 1625 ntBASIC20.54■□□□□ 0.88
HMGN4O00479 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HMGN4O00479 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.54■□□□□ 0.88
HMGN4O00479 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.54■□□□□ 0.88
HMGN4O00479 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HMGN4O00479 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HMGN4O00479 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGN4O00479 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGN4O00479 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGN4O00479 LINC01960-201ENST00000563759 1884 ntBASIC20.54■□□□□ 0.88
HMGN4O00479 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
HMGN4O00479 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGN4O00479 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGN4O00479 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGN4O00479 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HMGN4O00479 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
HMGN4O00479 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.53■□□□□ 0.88
HMGN4O00479 AL035685.1-201ENST00000636663 812 ntBASIC20.53■□□□□ 0.88
HMGN4O00479 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGN4O00479 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.53■□□□□ 0.88
HMGN4O00479 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGN4O00479 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGN4O00479 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.53■□□□□ 0.88
HMGN4O00479 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HMGN4O00479 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
HMGN4O00479 AC092053.2-201ENST00000640557 1818 ntBASIC20.53■□□□□ 0.88
HMGN4O00479 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
HMGN4O00479 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGN4O00479 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.52■□□□□ 0.88
HMGN4O00479 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HMGN4O00479 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.52■□□□□ 0.88
HMGN4O00479 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
HMGN4O00479 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGN4O00479 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
HMGN4O00479 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGN4O00479 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGN4O00479 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
HMGN4O00479 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGN4O00479 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
HMGN4O00479 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
HMGN4O00479 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGN4O00479 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HMGN4O00479 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGN4O00479 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGN4O00479 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.51■□□□□ 0.87
HMGN4O00479 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGN4O00479 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.51■□□□□ 0.87
HMGN4O00479 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGN4O00479 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
HMGN4O00479 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.5■□□□□ 0.87
HMGN4O00479 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGN4O00479 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGN4O00479 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.5■□□□□ 0.87
HMGN4O00479 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.5■□□□□ 0.87
HMGN4O00479 CLDN5-201ENST00000403084 2357 ntBASIC20.5■□□□□ 0.87
HMGN4O00479 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGN4O00479 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGN4O00479 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
HMGN4O00479 AL117332.1-201ENST00000622628 974 ntBASIC20.5■□□□□ 0.87
HMGN4O00479 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGN4O00479 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGN4O00479 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HMGN4O00479 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HMGN4O00479 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
HMGN4O00479 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms