Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 HLF-202ENST00000430986 1385 ntTSL 2 BASIC15.11■□□□□ 0.01
SMARCA1P28370 GLYR1-212ENST00000591451 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SMARCA1P28370 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC15.1■□□□□ 0.01
SMARCA1P28370 THEGL-202ENST00000512175 1650 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
SMARCA1P28370 CDC20B-203ENST00000381375 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SMARCA1P28370 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC15.1■□□□□ 0.01
SMARCA1P28370 EPB42-202ENST00000441366 2374 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SMARCA1P28370 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
SMARCA1P28370 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SMARCA1P28370 TRMT2B-202ENST00000372936 3327 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
SMARCA1P28370 AGAP4-203ENST00000448048 2439 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SMARCA1P28370 FAM76A-202ENST00000234549 992 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SMARCA1P28370 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SMARCA1P28370 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SMARCA1P28370 RBP4-203ENST00000371469 814 ntTSL 5 BASIC15.1■□□□□ 0.01
SMARCA1P28370 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC15.1■□□□□ 0.01
SMARCA1P28370 MYH9-202ENST00000401701 789 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SMARCA1P28370 RBMXP1-201ENST00000408004 1191 ntBASIC15.1■□□□□ 0.01
SMARCA1P28370 RN7SL789P-201ENST00000478944 293 ntBASIC15.1■□□□□ 0.01
SMARCA1P28370 AC233724.9-201ENST00000511694 407 ntBASIC15.1■□□□□ 0.01
SMARCA1P28370 CDK7-211ENST00000514676 1164 ntTSL 5 BASIC15.1■□□□□ 0.01
SMARCA1P28370 FAM76A-207ENST00000530324 1027 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SMARCA1P28370 CCDC42-202ENST00000539522 1087 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SMARCA1P28370 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
SMARCA1P28370 AL590235.1-201ENST00000564650 861 ntBASIC15.1■□□□□ 0.01
SMARCA1P28370 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SMARCA1P28370 AC138305.1-201ENST00000568932 561 ntTSL 5 BASIC15.1■□□□□ 0.01
SMARCA1P28370 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC15.1■□□□□ 0.01
SMARCA1P28370 NOSIP-204ENST00000596358 1005 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SMARCA1P28370 SMIM26-203ENST00000608034 670 ntAPPRIS ALT2 TSL 3 BASIC15.1■□□□□ 0.01
SMARCA1P28370 MIR6770-3-201ENST00000616362 60 ntBASIC15.1■□□□□ 0.01
SMARCA1P28370 MIR6770-2-201ENST00000618304 60 ntBASIC15.1■□□□□ 0.01
SMARCA1P28370 ETV2-207ENST00000619399 994 ntTSL 5 BASIC15.1■□□□□ 0.01
SMARCA1P28370 MIR6770-1-201ENST00000622248 60 ntBASIC15.1■□□□□ 0.01
SMARCA1P28370 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC15.1■□□□□ 0.01
SMARCA1P28370 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC15.1■□□□□ 0.01
SMARCA1P28370 BET1-201ENST00000222547 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SMARCA1P28370 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SMARCA1P28370 SUCLG2-203ENST00000492795 1512 ntTSL 2 BASIC15.1■□□□□ 0.01
SMARCA1P28370 FAM117A-209ENST00000513602 1522 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
SMARCA1P28370 ZNF555-203ENST00000591539 2270 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
SMARCA1P28370 LSM8-201ENST00000249299 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SMARCA1P28370 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
SMARCA1P28370 STRADA-204ENST00000392950 2778 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SMARCA1P28370 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
SMARCA1P28370 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SMARCA1P28370 AL449403.1-201ENST00000432783 1577 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SMARCA1P28370 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
SMARCA1P28370 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SMARCA1P28370 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
SMARCA1P28370 AL031687.1-201ENST00000450586 2137 ntTSL 2 BASIC15.1■□□□□ 0.01
SMARCA1P28370 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SMARCA1P28370 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SMARCA1P28370 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
SMARCA1P28370 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SMARCA1P28370 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
SMARCA1P28370 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
SMARCA1P28370 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
SMARCA1P28370 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC15.09■□□□□ 0.01
SMARCA1P28370 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC15.09■□□□□ 0.01
SMARCA1P28370 PBXIP1-203ENST00000368465 3144 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
SMARCA1P28370 VAV1-202ENST00000539284 2627 ntTSL 5 BASIC15.09■□□□□ 0.01
SMARCA1P28370 SEC22C-205ENST00000417572 1513 ntTSL 3 BASIC15.09■□□□□ 0.01
SMARCA1P28370 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SMARCA1P28370 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
SMARCA1P28370 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
SMARCA1P28370 AL358876.2-201ENST00000424689 477 ntTSL 3 BASIC15.09■□□□□ 0.01
SMARCA1P28370 FAM86FP-202ENST00000427893 829 ntTSL 5 BASIC15.09■□□□□ 0.01
SMARCA1P28370 AL357558.2-201ENST00000431915 425 ntTSL 2 BASIC15.09■□□□□ 0.01
SMARCA1P28370 AP000533.1-201ENST00000456143 1177 ntBASIC15.09■□□□□ 0.01
SMARCA1P28370 AC139795.1-201ENST00000499314 838 ntTSL 5 BASIC15.09■□□□□ 0.01
SMARCA1P28370 NMNAT3-212ENST00000511444 873 ntTSL 3 BASIC15.09■□□□□ 0.01
SMARCA1P28370 AP001102.1-201ENST00000528959 409 ntBASIC15.09■□□□□ 0.01
SMARCA1P28370 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SMARCA1P28370 AC138150.1-201ENST00000589950 570 ntTSL 4 BASIC15.09■□□□□ 0.01
SMARCA1P28370 PRMT1P1-201ENST00000604252 1009 ntBASIC15.09■□□□□ 0.01
SMARCA1P28370 AC020904.3-201ENST00000624199 442 ntBASIC15.09■□□□□ 0.01
SMARCA1P28370 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC15.09■□□□□ 0.01
SMARCA1P28370 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC15.09■□□□□ 0.01
SMARCA1P28370 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC15.09■□□□□ 0.01
SMARCA1P28370 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
SMARCA1P28370 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC15.09■□□□□ 0.01
SMARCA1P28370 MUC20-203ENST00000436408 2463 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
SMARCA1P28370 HTR4-201ENST00000360693 3082 ntTSL 5 BASIC15.09■□□□□ 0.01
SMARCA1P28370 RBMY1E-203ENST00000382659 1921 ntAPPRIS P5 TSL 1 (best) BASIC15.09■□□□□ 0.01
SMARCA1P28370 RBMY1D-202ENST00000382680 1921 ntAPPRIS P5 TSL 1 (best) BASIC15.09■□□□□ 0.01
SMARCA1P28370 RBMY1A1-203ENST00000382707 1921 ntAPPRIS P5 TSL 1 (best) BASIC15.09■□□□□ 0.01
SMARCA1P28370 RBMY1B-202ENST00000383020 1921 ntAPPRIS P5 TSL 1 (best) BASIC15.09■□□□□ 0.01
SMARCA1P28370 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
SMARCA1P28370 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SMARCA1P28370 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SMARCA1P28370 ACR-201ENST00000216139 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SMARCA1P28370 AC087386.2-201ENST00000623212 4637 ntBASIC15.09■□□□□ 0.01
SMARCA1P28370 LINC00523-206ENST00000556697 2071 ntTSL 2 BASIC15.08■□□□□ 0.01
SMARCA1P28370 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0.01
SMARCA1P28370 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
SMARCA1P28370 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
SMARCA1P28370 AAAS-201ENST00000209873 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
SMARCA1P28370 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
SMARCA1P28370 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms