Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
RFC3P40938 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RFC3P40938 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC12.32□□□□□ -0.44
RFC3P40938 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RFC3P40938 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
RFC3P40938 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
RFC3P40938 FP325330.2-201ENST00000624219 5630 ntBASIC12.32□□□□□ -0.44
RFC3P40938 CCT3-204ENST00000368259 1815 ntTSL 2 BASIC12.32□□□□□ -0.44
RFC3P40938 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC12.32□□□□□ -0.44
RFC3P40938 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
RFC3P40938 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RFC3P40938 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RFC3P40938 ZSWIM3-201ENST00000255152 2773 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RFC3P40938 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
RFC3P40938 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
RFC3P40938 AC004899.2-201ENST00000622993 3860 ntBASIC12.32□□□□□ -0.44
RFC3P40938 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
RFC3P40938 AC012531.1-201ENST00000562848 2680 ntBASIC12.32□□□□□ -0.44
RFC3P40938 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
RFC3P40938 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
RFC3P40938 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
RFC3P40938 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RFC3P40938 DPPA5-201ENST00000370370 679 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RFC3P40938 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
RFC3P40938 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC12.32□□□□□ -0.44
RFC3P40938 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC12.32□□□□□ -0.44
RFC3P40938 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC12.32□□□□□ -0.44
RFC3P40938 AC025594.1-201ENST00000469533 543 ntBASIC12.32□□□□□ -0.44
RFC3P40938 AC112250.1-201ENST00000504640 745 ntBASIC12.32□□□□□ -0.44
RFC3P40938 FAM86KP-201ENST00000509817 987 ntBASIC12.32□□□□□ -0.44
RFC3P40938 SEPHS2P1-201ENST00000511618 1162 ntBASIC12.32□□□□□ -0.44
RFC3P40938 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC12.32□□□□□ -0.44
RFC3P40938 AC103736.1-201ENST00000524410 605 ntTSL 3 BASIC12.32□□□□□ -0.44
RFC3P40938 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
RFC3P40938 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC12.32□□□□□ -0.44
RFC3P40938 RN7SL605P-201ENST00000577229 281 ntBASIC12.32□□□□□ -0.44
RFC3P40938 MBP-238ENST00000580402 915 ntTSL 5 BASIC12.32□□□□□ -0.44
RFC3P40938 RN7SL596P-201ENST00000582123 288 ntBASIC12.32□□□□□ -0.44
RFC3P40938 SLC6A2-201ENST00000219833 2858 ntTSL 5 BASIC12.32□□□□□ -0.44
RFC3P40938 RPS27L-201ENST00000330964 6434 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RFC3P40938 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
RFC3P40938 PPP2R2C-204ENST00000506140 1780 ntTSL 2 BASIC12.32□□□□□ -0.44
RFC3P40938 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
RFC3P40938 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RFC3P40938 ZNF570-202ENST00000586475 1985 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
RFC3P40938 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
RFC3P40938 EFHC2-202ENST00000420999 2464 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RFC3P40938 DAXX-213ENST00000620164 2462 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
RFC3P40938 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
RFC3P40938 REXO1L1P-201ENST00000379010 6598 ntBASIC12.32□□□□□ -0.44
RFC3P40938 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC12.32□□□□□ -0.44
RFC3P40938 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC12.32□□□□□ -0.44
RFC3P40938 KLKP1-203ENST00000600104 1532 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
RFC3P40938 C1QTNF9-202ENST00000382071 1854 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
RFC3P40938 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC12.31□□□□□ -0.44
RFC3P40938 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 AC064850.1-201ENST00000413279 1398 ntBASIC12.31□□□□□ -0.44
RFC3P40938 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 EFR3B-205ENST00000405108 2432 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 RBM10-202ENST00000345781 3108 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
RFC3P40938 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC12.31□□□□□ -0.44
RFC3P40938 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 AL445209.1-201ENST00000607269 3491 ntBASIC12.31□□□□□ -0.44
RFC3P40938 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 ARAF-203ENST00000377045 2458 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 DLX1-201ENST00000341900 2130 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC12.31□□□□□ -0.44
RFC3P40938 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 PHLDB1-201ENST00000356063 5240 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
RFC3P40938 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 CHD5-201ENST00000262450 9646 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 VENTXP1-201ENST00000569334 2716 ntBASIC12.31□□□□□ -0.44
RFC3P40938 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
RFC3P40938 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC12.31□□□□□ -0.44
RFC3P40938 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
RFC3P40938 AL513165.1-201ENST00000413915 289 ntTSL 3 BASIC12.31□□□□□ -0.44
RFC3P40938 PGK1P2-201ENST00000431702 1214 ntBASIC12.31□□□□□ -0.44
RFC3P40938 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC12.31□□□□□ -0.44
RFC3P40938 AC092896.1-201ENST00000465850 380 ntBASIC12.31□□□□□ -0.44
RFC3P40938 AC083801.1-201ENST00000491689 358 ntBASIC12.31□□□□□ -0.44
RFC3P40938 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC12.31□□□□□ -0.44
RFC3P40938 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC12.31□□□□□ -0.44
RFC3P40938 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC12.31□□□□□ -0.44
RFC3P40938 WNT5B-206ENST00000542408 508 ntTSL 3 BASIC12.31□□□□□ -0.44
RFC3P40938 BCDIN3D-AS1-202ENST00000549124 468 ntTSL 3 BASIC12.31□□□□□ -0.44
RFC3P40938 APOC1-209ENST00000592885 562 ntTSL 3 BASIC12.31□□□□□ -0.44
RFC3P40938 AC113385.2-201ENST00000614465 762 ntBASIC12.31□□□□□ -0.44
RFC3P40938 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC12.31□□□□□ -0.44
RFC3P40938 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
RFC3P40938 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 VAPB-202ENST00000395802 1834 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 RIN2-202ENST00000440354 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
RFC3P40938 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC12.31□□□□□ -0.44
RFC3P40938 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC12.31□□□□□ -0.44
RFC3P40938 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms