Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
CHMP1AQ9HD42 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP1AQ9HD42 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP1AQ9HD42 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP1AQ9HD42 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP1AQ9HD42 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC18.94■□□□□ 0.62
CHMP1AQ9HD42 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP1AQ9HD42 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP1AQ9HD42 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP1AQ9HD42 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP1AQ9HD42 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
CHMP1AQ9HD42 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP1AQ9HD42 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP1AQ9HD42 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP1AQ9HD42 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP1AQ9HD42 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
CHMP1AQ9HD42 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP1AQ9HD42 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP1AQ9HD42 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
CHMP1AQ9HD42 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP1AQ9HD42 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP1AQ9HD42 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP1AQ9HD42 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
CHMP1AQ9HD42 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP1AQ9HD42 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP1AQ9HD42 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP1AQ9HD42 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP1AQ9HD42 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.93■□□□□ 0.62
CHMP1AQ9HD42 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP1AQ9HD42 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP1AQ9HD42 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP1AQ9HD42 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC18.92■□□□□ 0.62
CHMP1AQ9HD42 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP1AQ9HD42 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP1AQ9HD42 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP1AQ9HD42 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP1AQ9HD42 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP1AQ9HD42 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC18.92■□□□□ 0.62
CHMP1AQ9HD42 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
CHMP1AQ9HD42 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP1AQ9HD42 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP1AQ9HD42 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP1AQ9HD42 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC18.91■□□□□ 0.62
CHMP1AQ9HD42 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP1AQ9HD42 AC074183.2-201ENST00000623112 922 ntBASIC18.91■□□□□ 0.62
CHMP1AQ9HD42 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
CHMP1AQ9HD42 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP1AQ9HD42 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC18.9■□□□□ 0.62
CHMP1AQ9HD42 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC18.9■□□□□ 0.62
CHMP1AQ9HD42 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP1AQ9HD42 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
CHMP1AQ9HD42 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP1AQ9HD42 ATP5G2P3-201ENST00000429083 425 ntBASIC18.9■□□□□ 0.62
CHMP1AQ9HD42 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP1AQ9HD42 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC18.9■□□□□ 0.62
CHMP1AQ9HD42 MIR4281-201ENST00000580852 62 ntBASIC18.9■□□□□ 0.62
CHMP1AQ9HD42 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP1AQ9HD42 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP1AQ9HD42 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC18.9■□□□□ 0.62
CHMP1AQ9HD42 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
CHMP1AQ9HD42 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC18.89■□□□□ 0.61
CHMP1AQ9HD42 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP1AQ9HD42 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.89■□□□□ 0.61
CHMP1AQ9HD42 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
CHMP1AQ9HD42 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC18.89■□□□□ 0.61
CHMP1AQ9HD42 IDNK-201ENST00000376417 511 ntTSL 5 BASIC18.89■□□□□ 0.61
CHMP1AQ9HD42 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP1AQ9HD42 AC004987.1-201ENST00000428627 508 ntBASIC18.89■□□□□ 0.61
CHMP1AQ9HD42 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC18.89■□□□□ 0.61
CHMP1AQ9HD42 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
CHMP1AQ9HD42 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC18.89■□□□□ 0.61
CHMP1AQ9HD42 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP1AQ9HD42 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP1AQ9HD42 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC18.88■□□□□ 0.61
CHMP1AQ9HD42 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP1AQ9HD42 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP1AQ9HD42 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP1AQ9HD42 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.88■□□□□ 0.61
CHMP1AQ9HD42 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP1AQ9HD42 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP1AQ9HD42 KRT18P24-201ENST00000344739 1156 ntBASIC18.88■□□□□ 0.61
CHMP1AQ9HD42 AC010980.1-201ENST00000587192 1142 ntBASIC18.88■□□□□ 0.61
CHMP1AQ9HD42 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP1AQ9HD42 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
CHMP1AQ9HD42 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP1AQ9HD42 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP1AQ9HD42 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC18.88■□□□□ 0.61
CHMP1AQ9HD42 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC18.88■□□□□ 0.61
CHMP1AQ9HD42 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC18.88■□□□□ 0.61
CHMP1AQ9HD42 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP1AQ9HD42 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC18.88■□□□□ 0.61
CHMP1AQ9HD42 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
CHMP1AQ9HD42 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
CHMP1AQ9HD42 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.88■□□□□ 0.61
CHMP1AQ9HD42 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP1AQ9HD42 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP1AQ9HD42 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC18.88■□□□□ 0.61
CHMP1AQ9HD42 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CHMP1AQ9HD42 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP1AQ9HD42 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms