Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 BX005040.4-201ENST00000637145 1518 ntBASIC23.86■■□□□ 1.41
NKX2-4Q9H2Z4 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
NKX2-4Q9H2Z4 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
NKX2-4Q9H2Z4 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
NKX2-4Q9H2Z4 TSPY6P-201ENST00000448518 926 ntBASIC23.86■■□□□ 1.41
NKX2-4Q9H2Z4 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC23.86■■□□□ 1.41
NKX2-4Q9H2Z4 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC23.86■■□□□ 1.41
NKX2-4Q9H2Z4 DET1-205ENST00000558413 583 ntTSL 4 BASIC23.86■■□□□ 1.41
NKX2-4Q9H2Z4 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
NKX2-4Q9H2Z4 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
NKX2-4Q9H2Z4 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
NKX2-4Q9H2Z4 FP325331.1-202ENST00000623531 1380 ntBASIC23.86■■□□□ 1.41
NKX2-4Q9H2Z4 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.86■■□□□ 1.41
NKX2-4Q9H2Z4 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
NKX2-4Q9H2Z4 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
NKX2-4Q9H2Z4 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
NKX2-4Q9H2Z4 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
NKX2-4Q9H2Z4 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
NKX2-4Q9H2Z4 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC23.85■■□□□ 1.41
NKX2-4Q9H2Z4 MAZ-216ENST00000616501 991 ntTSL 5 BASIC23.85■■□□□ 1.41
NKX2-4Q9H2Z4 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC23.85■■□□□ 1.41
NKX2-4Q9H2Z4 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
NKX2-4Q9H2Z4 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
NKX2-4Q9H2Z4 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
NKX2-4Q9H2Z4 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
NKX2-4Q9H2Z4 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC23.84■■□□□ 1.41
NKX2-4Q9H2Z4 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
NKX2-4Q9H2Z4 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
NKX2-4Q9H2Z4 FAM201B-201ENST00000458407 597 ntBASIC23.84■■□□□ 1.41
NKX2-4Q9H2Z4 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC23.84■■□□□ 1.41
NKX2-4Q9H2Z4 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
NKX2-4Q9H2Z4 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC23.84■■□□□ 1.41
NKX2-4Q9H2Z4 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
NKX2-4Q9H2Z4 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
NKX2-4Q9H2Z4 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
NKX2-4Q9H2Z4 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
NKX2-4Q9H2Z4 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC23.83■■□□□ 1.41
NKX2-4Q9H2Z4 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC23.83■■□□□ 1.41
NKX2-4Q9H2Z4 AL138781.1-201ENST00000566567 1274 ntBASIC23.83■■□□□ 1.41
NKX2-4Q9H2Z4 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC23.83■■□□□ 1.41
NKX2-4Q9H2Z4 MFSD11-216ENST00000590393 1141 ntBASIC23.83■■□□□ 1.41
NKX2-4Q9H2Z4 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
NKX2-4Q9H2Z4 SHF-206ENST00000560471 2499 ntTSL 5 BASIC23.83■■□□□ 1.4
NKX2-4Q9H2Z4 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
NKX2-4Q9H2Z4 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
NKX2-4Q9H2Z4 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NKX2-4Q9H2Z4 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.82■■□□□ 1.4
NKX2-4Q9H2Z4 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
NKX2-4Q9H2Z4 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
NKX2-4Q9H2Z4 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NKX2-4Q9H2Z4 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC23.82■■□□□ 1.4
NKX2-4Q9H2Z4 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC23.82■■□□□ 1.4
NKX2-4Q9H2Z4 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC23.82■■□□□ 1.4
NKX2-4Q9H2Z4 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC23.82■■□□□ 1.4
NKX2-4Q9H2Z4 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NKX2-4Q9H2Z4 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC23.82■■□□□ 1.4
NKX2-4Q9H2Z4 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
NKX2-4Q9H2Z4 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NKX2-4Q9H2Z4 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
NKX2-4Q9H2Z4 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC23.81■■□□□ 1.4
NKX2-4Q9H2Z4 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
NKX2-4Q9H2Z4 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NKX2-4Q9H2Z4 GUSBP6-202ENST00000438529 1198 ntBASIC23.81■■□□□ 1.4
NKX2-4Q9H2Z4 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC23.81■■□□□ 1.4
NKX2-4Q9H2Z4 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC23.81■■□□□ 1.4
NKX2-4Q9H2Z4 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC23.81■■□□□ 1.4
NKX2-4Q9H2Z4 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NKX2-4Q9H2Z4 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
NKX2-4Q9H2Z4 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC23.81■■□□□ 1.4
NKX2-4Q9H2Z4 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC23.8■■□□□ 1.4
NKX2-4Q9H2Z4 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC23.8■■□□□ 1.4
NKX2-4Q9H2Z4 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NKX2-4Q9H2Z4 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
NKX2-4Q9H2Z4 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
NKX2-4Q9H2Z4 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
NKX2-4Q9H2Z4 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC23.79■■□□□ 1.4
NKX2-4Q9H2Z4 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
NKX2-4Q9H2Z4 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
NKX2-4Q9H2Z4 SLC7A5P2-201ENST00000553010 536 ntBASIC23.79■■□□□ 1.4
NKX2-4Q9H2Z4 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
NKX2-4Q9H2Z4 TFG-210ENST00000620299 1289 ntTSL 5 BASIC23.79■■□□□ 1.4
NKX2-4Q9H2Z4 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC23.79■■□□□ 1.4
NKX2-4Q9H2Z4 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
NKX2-4Q9H2Z4 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NKX2-4Q9H2Z4 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
NKX2-4Q9H2Z4 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
NKX2-4Q9H2Z4 AC008687.6-201ENST00000596318 630 ntBASIC23.78■■□□□ 1.4
NKX2-4Q9H2Z4 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
NKX2-4Q9H2Z4 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.78■■□□□ 1.4
NKX2-4Q9H2Z4 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC23.77■■□□□ 1.4
NKX2-4Q9H2Z4 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
NKX2-4Q9H2Z4 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
NKX2-4Q9H2Z4 METTL15-202ENST00000403099 795 ntTSL 5 BASIC23.77■■□□□ 1.4
NKX2-4Q9H2Z4 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC23.77■■□□□ 1.4
NKX2-4Q9H2Z4 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NKX2-4Q9H2Z4 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC23.77■■□□□ 1.4
NKX2-4Q9H2Z4 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NKX2-4Q9H2Z4 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
NKX2-4Q9H2Z4 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
NKX2-4Q9H2Z4 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms