Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC30.52■■■□□ 2.48
NPHP3Q7Z494 BX005040.4-201ENST00000637145 1518 ntBASIC30.52■■■□□ 2.48
NPHP3Q7Z494 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
NPHP3Q7Z494 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC30.52■■■□□ 2.48
NPHP3Q7Z494 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC30.52■■■□□ 2.48
NPHP3Q7Z494 MDK-213ENST00000617138 635 ntTSL 2 BASIC30.52■■■□□ 2.48
NPHP3Q7Z494 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC30.52■■■□□ 2.48
NPHP3Q7Z494 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC30.52■■■□□ 2.48
NPHP3Q7Z494 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC30.52■■■□□ 2.48
NPHP3Q7Z494 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC30.52■■■□□ 2.48
NPHP3Q7Z494 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
NPHP3Q7Z494 APTR-205ENST00000447009 902 ntTSL 2 BASIC30.51■■■□□ 2.48
NPHP3Q7Z494 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC30.51■■■□□ 2.48
NPHP3Q7Z494 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC30.51■■■□□ 2.47
NPHP3Q7Z494 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC30.5■■■□□ 2.47
NPHP3Q7Z494 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC30.5■■■□□ 2.47
NPHP3Q7Z494 TSPY20P-201ENST00000450910 630 ntBASIC30.5■■■□□ 2.47
NPHP3Q7Z494 GAMT-205ENST00000640762 751 ntTSL 5 BASIC30.5■■■□□ 2.47
NPHP3Q7Z494 SHF-207ENST00000560540 2062 ntTSL 5 BASIC30.5■■■□□ 2.47
NPHP3Q7Z494 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC30.5■■■□□ 2.47
NPHP3Q7Z494 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
NPHP3Q7Z494 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
NPHP3Q7Z494 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC30.5■■■□□ 2.47
NPHP3Q7Z494 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
NPHP3Q7Z494 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC30.49■■■□□ 2.47
NPHP3Q7Z494 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC30.49■■■□□ 2.47
NPHP3Q7Z494 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC30.49■■■□□ 2.47
NPHP3Q7Z494 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC30.49■■■□□ 2.47
NPHP3Q7Z494 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC30.49■■■□□ 2.47
NPHP3Q7Z494 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
NPHP3Q7Z494 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
NPHP3Q7Z494 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC30.48■■■□□ 2.47
NPHP3Q7Z494 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC30.48■■■□□ 2.47
NPHP3Q7Z494 SPI1-203ENST00000533030 661 ntTSL 2 BASIC30.48■■■□□ 2.47
NPHP3Q7Z494 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC30.48■■■□□ 2.47
NPHP3Q7Z494 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC30.48■■■□□ 2.47
NPHP3Q7Z494 LINC01529-204ENST00000636474 1715 ntBASIC30.48■■■□□ 2.47
NPHP3Q7Z494 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP3Q7Z494 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP3Q7Z494 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP3Q7Z494 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC30.47■■■□□ 2.47
NPHP3Q7Z494 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC30.47■■■□□ 2.47
NPHP3Q7Z494 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP3Q7Z494 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP3Q7Z494 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP3Q7Z494 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP3Q7Z494 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP3Q7Z494 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP3Q7Z494 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP3Q7Z494 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC30.47■■■□□ 2.47
NPHP3Q7Z494 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP3Q7Z494 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC30.47■■■□□ 2.47
NPHP3Q7Z494 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP3Q7Z494 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
NPHP3Q7Z494 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC30.46■■■□□ 2.47
NPHP3Q7Z494 AC144652.1-201ENST00000609974 1624 ntBASIC30.46■■■□□ 2.47
NPHP3Q7Z494 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
NPHP3Q7Z494 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC30.46■■■□□ 2.47
NPHP3Q7Z494 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC30.45■■■□□ 2.47
NPHP3Q7Z494 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC30.45■■■□□ 2.47
NPHP3Q7Z494 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
NPHP3Q7Z494 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC30.45■■■□□ 2.47
NPHP3Q7Z494 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC30.45■■■□□ 2.46
NPHP3Q7Z494 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC30.45■■■□□ 2.46
NPHP3Q7Z494 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
NPHP3Q7Z494 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
NPHP3Q7Z494 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC30.45■■■□□ 2.46
NPHP3Q7Z494 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
NPHP3Q7Z494 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC30.44■■■□□ 2.46
NPHP3Q7Z494 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
NPHP3Q7Z494 AL121749.1-202ENST00000609313 2153 ntBASIC30.44■■■□□ 2.46
NPHP3Q7Z494 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
NPHP3Q7Z494 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC30.44■■■□□ 2.46
NPHP3Q7Z494 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC30.44■■■□□ 2.46
NPHP3Q7Z494 TESC-206ENST00000541210 936 ntTSL 3 BASIC30.44■■■□□ 2.46
NPHP3Q7Z494 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
NPHP3Q7Z494 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
NPHP3Q7Z494 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
NPHP3Q7Z494 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
NPHP3Q7Z494 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
NPHP3Q7Z494 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC30.43■■■□□ 2.46
NPHP3Q7Z494 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
NPHP3Q7Z494 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC30.43■■■□□ 2.46
NPHP3Q7Z494 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC30.43■■■□□ 2.46
NPHP3Q7Z494 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC30.42■■■□□ 2.46
NPHP3Q7Z494 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
NPHP3Q7Z494 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC30.42■■■□□ 2.46
NPHP3Q7Z494 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC30.42■■■□□ 2.46
NPHP3Q7Z494 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
NPHP3Q7Z494 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
NPHP3Q7Z494 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
NPHP3Q7Z494 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC30.41■■■□□ 2.46
NPHP3Q7Z494 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC30.41■■■□□ 2.46
NPHP3Q7Z494 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
NPHP3Q7Z494 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC30.41■■■□□ 2.46
NPHP3Q7Z494 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC30.41■■■□□ 2.46
NPHP3Q7Z494 KRT18P6-201ENST00000555540 1265 ntBASIC30.41■■■□□ 2.46
NPHP3Q7Z494 MFSD11-216ENST00000590393 1141 ntBASIC30.41■■■□□ 2.46
NPHP3Q7Z494 AL121832.2-201ENST00000610979 668 ntBASIC30.41■■■□□ 2.46
NPHP3Q7Z494 AL050303.2-201ENST00000619798 666 ntBASIC30.41■■■□□ 2.46
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms