Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC133561.1-201ENST00000568600 2415 ntBASIC19.03■□□□□ 0.64
USF3Q68DE3 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USF3Q68DE3 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
USF3Q68DE3 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
USF3Q68DE3 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USF3Q68DE3 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.03■□□□□ 0.64
USF3Q68DE3 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.03■□□□□ 0.64
USF3Q68DE3 AC012414.1-201ENST00000556676 535 ntBASIC19.03■□□□□ 0.64
USF3Q68DE3 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USF3Q68DE3 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USF3Q68DE3 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC19.03■□□□□ 0.64
USF3Q68DE3 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USF3Q68DE3 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.02■□□□□ 0.64
USF3Q68DE3 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USF3Q68DE3 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.02■□□□□ 0.64
USF3Q68DE3 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USF3Q68DE3 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USF3Q68DE3 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
USF3Q68DE3 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USF3Q68DE3 AL161729.1-201ENST00000604104 1402 ntBASIC19.02■□□□□ 0.63
USF3Q68DE3 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
USF3Q68DE3 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
USF3Q68DE3 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USF3Q68DE3 AC027612.3-201ENST00000413684 1047 ntBASIC19.01■□□□□ 0.63
USF3Q68DE3 KRT18P5-201ENST00000436075 1291 ntBASIC19.01■□□□□ 0.63
USF3Q68DE3 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USF3Q68DE3 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.01■□□□□ 0.63
USF3Q68DE3 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USF3Q68DE3 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
USF3Q68DE3 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USF3Q68DE3 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USF3Q68DE3 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
USF3Q68DE3 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.01■□□□□ 0.63
USF3Q68DE3 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.01■□□□□ 0.63
USF3Q68DE3 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USF3Q68DE3 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
USF3Q68DE3 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC19.01■□□□□ 0.63
USF3Q68DE3 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
USF3Q68DE3 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USF3Q68DE3 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC19■□□□□ 0.63
USF3Q68DE3 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USF3Q68DE3 AC010525.1-201ENST00000585559 441 ntBASIC19■□□□□ 0.63
USF3Q68DE3 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
USF3Q68DE3 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC19■□□□□ 0.63
USF3Q68DE3 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC19■□□□□ 0.63
USF3Q68DE3 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC19■□□□□ 0.63
USF3Q68DE3 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
USF3Q68DE3 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USF3Q68DE3 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19■□□□□ 0.63
USF3Q68DE3 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC19■□□□□ 0.63
USF3Q68DE3 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
USF3Q68DE3 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USF3Q68DE3 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
USF3Q68DE3 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC18.99■□□□□ 0.63
USF3Q68DE3 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC18.99■□□□□ 0.63
USF3Q68DE3 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
USF3Q68DE3 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC18.99■□□□□ 0.63
USF3Q68DE3 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USF3Q68DE3 SHD-204ENST00000599689 1729 ntTSL 5 BASIC18.99■□□□□ 0.63
USF3Q68DE3 AC133637.1-201ENST00000624115 1537 ntBASIC18.99■□□□□ 0.63
USF3Q68DE3 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
USF3Q68DE3 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
USF3Q68DE3 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
USF3Q68DE3 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC18.98■□□□□ 0.63
USF3Q68DE3 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC18.98■□□□□ 0.63
USF3Q68DE3 IGHV3-19-201ENST00000521488 291 ntBASIC18.98■□□□□ 0.63
USF3Q68DE3 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USF3Q68DE3 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC18.98■□□□□ 0.63
USF3Q68DE3 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USF3Q68DE3 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
USF3Q68DE3 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC18.98■□□□□ 0.63
USF3Q68DE3 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USF3Q68DE3 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
USF3Q68DE3 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC18.98■□□□□ 0.63
USF3Q68DE3 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
USF3Q68DE3 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
USF3Q68DE3 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USF3Q68DE3 NME4-202ENST00000382940 766 ntTSL 3 BASIC18.98■□□□□ 0.63
USF3Q68DE3 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USF3Q68DE3 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC18.98■□□□□ 0.63
USF3Q68DE3 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC18.98■□□□□ 0.63
USF3Q68DE3 NME4-211ENST00000620944 1193 ntTSL 2 BASIC18.98■□□□□ 0.63
USF3Q68DE3 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC18.98■□□□□ 0.63
USF3Q68DE3 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USF3Q68DE3 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
USF3Q68DE3 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USF3Q68DE3 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
USF3Q68DE3 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
USF3Q68DE3 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USF3Q68DE3 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC18.97■□□□□ 0.63
USF3Q68DE3 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC18.97■□□□□ 0.63
USF3Q68DE3 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC18.97■□□□□ 0.63
USF3Q68DE3 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
USF3Q68DE3 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
USF3Q68DE3 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USF3Q68DE3 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USF3Q68DE3 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USF3Q68DE3 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC18.97■□□□□ 0.63
USF3Q68DE3 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USF3Q68DE3 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms