Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRIF1Q5T3J3 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LRIF1Q5T3J3 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRIF1Q5T3J3 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRIF1Q5T3J3 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRIF1Q5T3J3 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRIF1Q5T3J3 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.92■□□□□ 0.94
LRIF1Q5T3J3 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
LRIF1Q5T3J3 FP325331.1-202ENST00000623531 1380 ntBASIC20.92■□□□□ 0.94
LRIF1Q5T3J3 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
LRIF1Q5T3J3 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRIF1Q5T3J3 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRIF1Q5T3J3 LINC01529-204ENST00000636474 1715 ntBASIC20.92■□□□□ 0.94
LRIF1Q5T3J3 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRIF1Q5T3J3 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.92■□□□□ 0.94
LRIF1Q5T3J3 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
LRIF1Q5T3J3 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LRIF1Q5T3J3 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LRIF1Q5T3J3 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.91■□□□□ 0.94
LRIF1Q5T3J3 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
LRIF1Q5T3J3 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LRIF1Q5T3J3 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
LRIF1Q5T3J3 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC20.91■□□□□ 0.94
LRIF1Q5T3J3 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.91■□□□□ 0.94
LRIF1Q5T3J3 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.91■□□□□ 0.94
LRIF1Q5T3J3 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
LRIF1Q5T3J3 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.91■□□□□ 0.94
LRIF1Q5T3J3 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LRIF1Q5T3J3 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LRIF1Q5T3J3 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
LRIF1Q5T3J3 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LRIF1Q5T3J3 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC20.9■□□□□ 0.94
LRIF1Q5T3J3 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.9■□□□□ 0.94
LRIF1Q5T3J3 MIR6722-201ENST00000617286 78 ntBASIC20.9■□□□□ 0.94
LRIF1Q5T3J3 AC012354.3-201ENST00000623734 483 ntBASIC20.9■□□□□ 0.94
LRIF1Q5T3J3 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.9■□□□□ 0.94
LRIF1Q5T3J3 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LRIF1Q5T3J3 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LRIF1Q5T3J3 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LRIF1Q5T3J3 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.9■□□□□ 0.94
LRIF1Q5T3J3 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
LRIF1Q5T3J3 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.89■□□□□ 0.94
LRIF1Q5T3J3 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.89■□□□□ 0.93
LRIF1Q5T3J3 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
LRIF1Q5T3J3 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
LRIF1Q5T3J3 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC20.89■□□□□ 0.93
LRIF1Q5T3J3 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LRIF1Q5T3J3 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
LRIF1Q5T3J3 AC007375.3-201ENST00000600936 2314 ntBASIC20.89■□□□□ 0.93
LRIF1Q5T3J3 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LRIF1Q5T3J3 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.89■□□□□ 0.93
LRIF1Q5T3J3 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
LRIF1Q5T3J3 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LRIF1Q5T3J3 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.88■□□□□ 0.93
LRIF1Q5T3J3 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
LRIF1Q5T3J3 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.88■□□□□ 0.93
LRIF1Q5T3J3 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LRIF1Q5T3J3 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
LRIF1Q5T3J3 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRIF1Q5T3J3 AC005703.6-201ENST00000623265 1329 ntBASIC20.87■□□□□ 0.93
LRIF1Q5T3J3 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRIF1Q5T3J3 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.87■□□□□ 0.93
LRIF1Q5T3J3 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.87■□□□□ 0.93
LRIF1Q5T3J3 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRIF1Q5T3J3 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRIF1Q5T3J3 YBX1P4-201ENST00000392794 808 ntBASIC20.86■□□□□ 0.93
LRIF1Q5T3J3 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.86■□□□□ 0.93
LRIF1Q5T3J3 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.86■□□□□ 0.93
LRIF1Q5T3J3 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
LRIF1Q5T3J3 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRIF1Q5T3J3 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
LRIF1Q5T3J3 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
LRIF1Q5T3J3 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
LRIF1Q5T3J3 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
LRIF1Q5T3J3 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRIF1Q5T3J3 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.85■□□□□ 0.93
LRIF1Q5T3J3 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.85■□□□□ 0.93
LRIF1Q5T3J3 AL033527.3-201ENST00000566366 1196 ntBASIC20.85■□□□□ 0.93
LRIF1Q5T3J3 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
LRIF1Q5T3J3 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.85■□□□□ 0.93
LRIF1Q5T3J3 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.85■□□□□ 0.93
LRIF1Q5T3J3 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
LRIF1Q5T3J3 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRIF1Q5T3J3 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRIF1Q5T3J3 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.84■□□□□ 0.93
LRIF1Q5T3J3 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
LRIF1Q5T3J3 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
LRIF1Q5T3J3 DUX4L4-201ENST00000566884 1269 ntBASIC20.84■□□□□ 0.93
LRIF1Q5T3J3 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRIF1Q5T3J3 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRIF1Q5T3J3 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRIF1Q5T3J3 KRT8P33-201ENST00000508125 1423 ntBASIC20.84■□□□□ 0.93
LRIF1Q5T3J3 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LRIF1Q5T3J3 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
LRIF1Q5T3J3 AC021242.3-201ENST00000607598 1377 ntBASIC20.84■□□□□ 0.93
LRIF1Q5T3J3 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRIF1Q5T3J3 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRIF1Q5T3J3 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRIF1Q5T3J3 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LRIF1Q5T3J3 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms