Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
EPHB3P54753 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
EPHB3P54753 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
EPHB3P54753 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC23.25■■□□□ 1.31
EPHB3P54753 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
EPHB3P54753 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
EPHB3P54753 HACD1-201ENST00000326961 773 ntTSL 2 BASIC23.25■■□□□ 1.31
EPHB3P54753 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC23.25■■□□□ 1.31
EPHB3P54753 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC23.25■■□□□ 1.31
EPHB3P54753 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
EPHB3P54753 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC23.25■■□□□ 1.31
EPHB3P54753 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC23.25■■□□□ 1.31
EPHB3P54753 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC23.25■■□□□ 1.31
EPHB3P54753 ABCB10P4-201ENST00000566803 2184 ntBASIC23.25■■□□□ 1.31
EPHB3P54753 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
EPHB3P54753 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
EPHB3P54753 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
EPHB3P54753 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
EPHB3P54753 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
EPHB3P54753 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
EPHB3P54753 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
EPHB3P54753 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
EPHB3P54753 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
EPHB3P54753 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
EPHB3P54753 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC23.24■■□□□ 1.31
EPHB3P54753 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
EPHB3P54753 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
EPHB3P54753 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
EPHB3P54753 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
EPHB3P54753 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
EPHB3P54753 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
EPHB3P54753 AC004687.1-201ENST00000579003 1625 ntBASIC23.23■■□□□ 1.31
EPHB3P54753 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC23.23■■□□□ 1.31
EPHB3P54753 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC23.23■■□□□ 1.31
EPHB3P54753 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC23.23■■□□□ 1.31
EPHB3P54753 DUX4L2-201ENST00000561772 1275 ntBASIC23.23■■□□□ 1.31
EPHB3P54753 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC23.23■■□□□ 1.31
EPHB3P54753 DUX4L6-201ENST00000626483 1275 ntBASIC23.23■■□□□ 1.31
EPHB3P54753 DUX4L1-201ENST00000627662 1275 ntBASIC23.23■■□□□ 1.31
EPHB3P54753 DUX4L8-201ENST00000629013 1275 ntBASIC23.23■■□□□ 1.31
EPHB3P54753 DUX4L3-201ENST00000630187 1275 ntBASIC23.23■■□□□ 1.31
EPHB3P54753 DUX4L7-201ENST00000630678 1275 ntBASIC23.23■■□□□ 1.31
EPHB3P54753 DUX4L5-201ENST00000630834 1275 ntBASIC23.23■■□□□ 1.31
EPHB3P54753 AC105233.4-201ENST00000642045 216 ntBASIC23.23■■□□□ 1.31
EPHB3P54753 MPST-204ENST00000404393 1329 ntTSL 5 BASIC23.23■■□□□ 1.31
EPHB3P54753 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
EPHB3P54753 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
EPHB3P54753 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
EPHB3P54753 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC23.22■■□□□ 1.31
EPHB3P54753 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
EPHB3P54753 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
EPHB3P54753 AL353803.4-201ENST00000565882 1934 ntBASIC23.22■■□□□ 1.31
EPHB3P54753 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
EPHB3P54753 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
EPHB3P54753 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
EPHB3P54753 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC23.22■■□□□ 1.31
EPHB3P54753 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC23.22■■□□□ 1.31
EPHB3P54753 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC23.22■■□□□ 1.31
EPHB3P54753 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
EPHB3P54753 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
EPHB3P54753 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
EPHB3P54753 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
EPHB3P54753 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC23.21■■□□□ 1.31
EPHB3P54753 KRT18P5-201ENST00000436075 1291 ntBASIC23.21■■□□□ 1.31
EPHB3P54753 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC23.21■■□□□ 1.31
EPHB3P54753 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC23.21■■□□□ 1.31
EPHB3P54753 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC23.21■■□□□ 1.31
EPHB3P54753 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC23.21■■□□□ 1.31
EPHB3P54753 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
EPHB3P54753 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
EPHB3P54753 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC23.21■■□□□ 1.31
EPHB3P54753 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
EPHB3P54753 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC23.2■■□□□ 1.3
EPHB3P54753 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
EPHB3P54753 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
EPHB3P54753 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
EPHB3P54753 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC23.2■■□□□ 1.3
EPHB3P54753 LINC02228-203ENST00000641970 1355 ntBASIC23.2■■□□□ 1.3
EPHB3P54753 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
EPHB3P54753 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC23.2■■□□□ 1.3
EPHB3P54753 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC23.2■■□□□ 1.3
EPHB3P54753 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
EPHB3P54753 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
EPHB3P54753 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
EPHB3P54753 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
EPHB3P54753 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
EPHB3P54753 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
EPHB3P54753 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC23.19■■□□□ 1.3
EPHB3P54753 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC23.19■■□□□ 1.3
EPHB3P54753 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
EPHB3P54753 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC23.19■■□□□ 1.3
EPHB3P54753 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
EPHB3P54753 NT5C3AP1-201ENST00000394500 1012 ntBASIC23.19■■□□□ 1.3
EPHB3P54753 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC23.19■■□□□ 1.3
EPHB3P54753 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC23.19■■□□□ 1.3
EPHB3P54753 CCDC92B-201ENST00000575506 885 ntBASIC23.19■■□□□ 1.3
EPHB3P54753 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC23.19■■□□□ 1.3
EPHB3P54753 AC068587.7-201ENST00000641602 218 ntBASIC23.19■■□□□ 1.3
EPHB3P54753 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
EPHB3P54753 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC23.19■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms