Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.48■■□□□ 1.03
PCNAP12004 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCNAP12004 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCNAP12004 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCNAP12004 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCNAP12004 AC009102.2-201ENST00000606772 1639 ntBASIC21.47■■□□□ 1.03
PCNAP12004 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCNAP12004 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.47■■□□□ 1.03
PCNAP12004 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PCNAP12004 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.47■■□□□ 1.03
PCNAP12004 GRAMD4P7-201ENST00000578182 1232 ntBASIC21.47■■□□□ 1.03
PCNAP12004 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCNAP12004 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.47■■□□□ 1.03
PCNAP12004 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCNAP12004 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCNAP12004 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.47■■□□□ 1.03
PCNAP12004 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCNAP12004 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCNAP12004 LINC00565-201ENST00000562710 2331 ntBASIC21.46■■□□□ 1.03
PCNAP12004 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCNAP12004 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PCNAP12004 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.46■■□□□ 1.03
PCNAP12004 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.46■■□□□ 1.03
PCNAP12004 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.46■■□□□ 1.03
PCNAP12004 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.46■■□□□ 1.03
PCNAP12004 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
PCNAP12004 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
PCNAP12004 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.46■■□□□ 1.03
PCNAP12004 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCNAP12004 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.46■■□□□ 1.03
PCNAP12004 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCNAP12004 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
PCNAP12004 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.03
PCNAP12004 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCNAP12004 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
PCNAP12004 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCNAP12004 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PCNAP12004 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
PCNAP12004 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PCNAP12004 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
PCNAP12004 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.45■■□□□ 1.02
PCNAP12004 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.45■■□□□ 1.02
PCNAP12004 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.45■■□□□ 1.02
PCNAP12004 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.45■■□□□ 1.02
PCNAP12004 C1orf229-201ENST00000623686 2258 ntBASIC21.45■■□□□ 1.02
PCNAP12004 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.45■■□□□ 1.02
PCNAP12004 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCNAP12004 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCNAP12004 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCNAP12004 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
PCNAP12004 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.44■■□□□ 1.02
PCNAP12004 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.44■■□□□ 1.02
PCNAP12004 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
PCNAP12004 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCNAP12004 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCNAP12004 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
PCNAP12004 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PCNAP12004 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCNAP12004 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.43■■□□□ 1.02
PCNAP12004 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PCNAP12004 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCNAP12004 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.43■■□□□ 1.02
PCNAP12004 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.43■■□□□ 1.02
PCNAP12004 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCNAP12004 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCNAP12004 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
PCNAP12004 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.43■■□□□ 1.02
PCNAP12004 LINC01529-204ENST00000636474 1715 ntBASIC21.43■■□□□ 1.02
PCNAP12004 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCNAP12004 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
PCNAP12004 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PCNAP12004 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
PCNAP12004 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PCNAP12004 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PCNAP12004 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PCNAP12004 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
PCNAP12004 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.42■■□□□ 1.02
PCNAP12004 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.42■■□□□ 1.02
PCNAP12004 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PCNAP12004 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
PCNAP12004 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCNAP12004 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.41■■□□□ 1.02
PCNAP12004 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PCNAP12004 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.41■■□□□ 1.02
PCNAP12004 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
PCNAP12004 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.41■■□□□ 1.02
PCNAP12004 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCNAP12004 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.41■■□□□ 1.02
PCNAP12004 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PCNAP12004 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCNAP12004 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.41■■□□□ 1.02
PCNAP12004 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
PCNAP12004 FP325331.1-202ENST00000623531 1380 ntBASIC21.4■■□□□ 1.02
PCNAP12004 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCNAP12004 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.4■■□□□ 1.02
PCNAP12004 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PCNAP12004 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCNAP12004 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.4■■□□□ 1.02
PCNAP12004 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCNAP12004 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms