Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC28.72■■■□□ 2.19
PTCD1O75127 AC142381.3-201ENST00000568208 1670 ntBASIC28.72■■■□□ 2.19
PTCD1O75127 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC28.72■■■□□ 2.19
PTCD1O75127 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
PTCD1O75127 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
PTCD1O75127 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
PTCD1O75127 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC28.71■■■□□ 2.19
PTCD1O75127 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
PTCD1O75127 ME3-201ENST00000323418 1068 ntTSL 5 BASIC28.71■■■□□ 2.19
PTCD1O75127 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC28.71■■■□□ 2.19
PTCD1O75127 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC28.71■■■□□ 2.19
PTCD1O75127 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC28.71■■■□□ 2.19
PTCD1O75127 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC28.71■■■□□ 2.19
PTCD1O75127 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
PTCD1O75127 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
PTCD1O75127 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC28.7■■■□□ 2.19
PTCD1O75127 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
PTCD1O75127 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
PTCD1O75127 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC28.7■■■□□ 2.18
PTCD1O75127 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
PTCD1O75127 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC28.7■■■□□ 2.18
PTCD1O75127 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC28.7■■■□□ 2.18
PTCD1O75127 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC28.7■■■□□ 2.18
PTCD1O75127 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC28.7■■■□□ 2.18
PTCD1O75127 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC28.7■■■□□ 2.18
PTCD1O75127 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC28.7■■■□□ 2.18
PTCD1O75127 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
PTCD1O75127 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC28.69■■■□□ 2.18
PTCD1O75127 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
PTCD1O75127 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
PTCD1O75127 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
PTCD1O75127 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
PTCD1O75127 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
PTCD1O75127 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
PTCD1O75127 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
PTCD1O75127 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC28.69■■■□□ 2.18
PTCD1O75127 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC28.68■■■□□ 2.18
PTCD1O75127 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC28.68■■■□□ 2.18
PTCD1O75127 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
PTCD1O75127 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
PTCD1O75127 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC28.68■■■□□ 2.18
PTCD1O75127 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC28.68■■■□□ 2.18
PTCD1O75127 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
PTCD1O75127 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC28.68■■■□□ 2.18
PTCD1O75127 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
PTCD1O75127 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
PTCD1O75127 ID1-201ENST00000376105 1233 ntBASIC28.67■■■□□ 2.18
PTCD1O75127 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
PTCD1O75127 KRT18P61-201ENST00000585825 1298 ntBASIC28.67■■■□□ 2.18
PTCD1O75127 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC28.67■■■□□ 2.18
PTCD1O75127 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC28.67■■■□□ 2.18
PTCD1O75127 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC28.67■■■□□ 2.18
PTCD1O75127 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
PTCD1O75127 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
PTCD1O75127 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC28.66■■■□□ 2.18
PTCD1O75127 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
PTCD1O75127 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC28.66■■■□□ 2.18
PTCD1O75127 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC28.66■■■□□ 2.18
PTCD1O75127 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC28.66■■■□□ 2.18
PTCD1O75127 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC28.66■■■□□ 2.18
PTCD1O75127 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
PTCD1O75127 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC28.65■■■□□ 2.18
PTCD1O75127 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
PTCD1O75127 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
PTCD1O75127 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC28.65■■■□□ 2.18
PTCD1O75127 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC28.65■■■□□ 2.18
PTCD1O75127 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC28.65■■■□□ 2.18
PTCD1O75127 RARA-203ENST00000394086 2008 ntTSL 2 BASIC28.65■■■□□ 2.18
PTCD1O75127 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC28.65■■■□□ 2.18
PTCD1O75127 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
PTCD1O75127 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC28.65■■■□□ 2.18
PTCD1O75127 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
PTCD1O75127 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC28.64■■■□□ 2.18
PTCD1O75127 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC28.64■■■□□ 2.18
PTCD1O75127 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC28.64■■■□□ 2.18
PTCD1O75127 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC28.64■■■□□ 2.18
PTCD1O75127 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
PTCD1O75127 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.17
PTCD1O75127 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC28.63■■■□□ 2.17
PTCD1O75127 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
PTCD1O75127 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
PTCD1O75127 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC28.62■■■□□ 2.17
PTCD1O75127 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
PTCD1O75127 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
PTCD1O75127 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC28.62■■■□□ 2.17
PTCD1O75127 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
PTCD1O75127 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
PTCD1O75127 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
PTCD1O75127 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC28.61■■■□□ 2.17
PTCD1O75127 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
PTCD1O75127 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
PTCD1O75127 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
PTCD1O75127 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC28.61■■■□□ 2.17
PTCD1O75127 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC28.61■■■□□ 2.17
PTCD1O75127 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC28.61■■■□□ 2.17
PTCD1O75127 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC28.61■■■□□ 2.17
PTCD1O75127 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC28.61■■■□□ 2.17
PTCD1O75127 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
PTCD1O75127 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC28.6■■■□□ 2.17
PTCD1O75127 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC28.6■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms