Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
XRCC3O43542 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
XRCC3O43542 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC18.96■□□□□ 0.63
XRCC3O43542 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
XRCC3O43542 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
XRCC3O43542 LBH-205ENST00000407930 756 ntTSL 2 BASIC18.96■□□□□ 0.63
XRCC3O43542 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC18.96■□□□□ 0.63
XRCC3O43542 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
XRCC3O43542 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
XRCC3O43542 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC18.96■□□□□ 0.63
XRCC3O43542 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
XRCC3O43542 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.96■□□□□ 0.63
XRCC3O43542 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.62
XRCC3O43542 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC3O43542 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC3O43542 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC3O43542 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC3O43542 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC18.95■□□□□ 0.62
XRCC3O43542 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC3O43542 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.95■□□□□ 0.62
XRCC3O43542 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC3O43542 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC3O43542 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC3O43542 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC18.94■□□□□ 0.62
XRCC3O43542 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
XRCC3O43542 FAM99A-202ENST00000538190 1989 ntBASIC18.94■□□□□ 0.62
XRCC3O43542 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
XRCC3O43542 RPS2-202ENST00000526522 924 ntTSL 2 BASIC18.94■□□□□ 0.62
XRCC3O43542 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC18.94■□□□□ 0.62
XRCC3O43542 MIR6765-201ENST00000614092 87 ntBASIC18.94■□□□□ 0.62
XRCC3O43542 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
XRCC3O43542 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
XRCC3O43542 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
XRCC3O43542 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
XRCC3O43542 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
XRCC3O43542 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
XRCC3O43542 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
XRCC3O43542 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.93■□□□□ 0.62
XRCC3O43542 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
XRCC3O43542 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC18.93■□□□□ 0.62
XRCC3O43542 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
XRCC3O43542 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
XRCC3O43542 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC18.93■□□□□ 0.62
XRCC3O43542 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
XRCC3O43542 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC18.93■□□□□ 0.62
XRCC3O43542 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
XRCC3O43542 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
XRCC3O43542 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
XRCC3O43542 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
XRCC3O43542 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
XRCC3O43542 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
XRCC3O43542 AC010542.4-201ENST00000563151 1910 ntBASIC18.92■□□□□ 0.62
XRCC3O43542 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC18.92■□□□□ 0.62
XRCC3O43542 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC18.92■□□□□ 0.62
XRCC3O43542 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
XRCC3O43542 AL592293.1-201ENST00000502889 1188 ntBASIC18.92■□□□□ 0.62
XRCC3O43542 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
XRCC3O43542 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
XRCC3O43542 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.91■□□□□ 0.62
XRCC3O43542 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC18.91■□□□□ 0.62
XRCC3O43542 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
XRCC3O43542 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
XRCC3O43542 GAK-223ENST00000628912 497 ntTSL 5 BASIC18.91■□□□□ 0.62
XRCC3O43542 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
XRCC3O43542 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
XRCC3O43542 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
XRCC3O43542 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC3O43542 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC3O43542 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC18.9■□□□□ 0.62
XRCC3O43542 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
XRCC3O43542 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC18.9■□□□□ 0.62
XRCC3O43542 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC3O43542 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC3O43542 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
XRCC3O43542 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC3O43542 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
XRCC3O43542 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC3O43542 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
XRCC3O43542 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC18.9■□□□□ 0.62
XRCC3O43542 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.62
XRCC3O43542 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC18.89■□□□□ 0.62
XRCC3O43542 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
XRCC3O43542 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
XRCC3O43542 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
XRCC3O43542 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
XRCC3O43542 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
XRCC3O43542 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
XRCC3O43542 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC18.89■□□□□ 0.61
XRCC3O43542 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC18.89■□□□□ 0.61
XRCC3O43542 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
XRCC3O43542 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
XRCC3O43542 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
XRCC3O43542 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
XRCC3O43542 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
XRCC3O43542 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.88■□□□□ 0.61
XRCC3O43542 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
XRCC3O43542 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
XRCC3O43542 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC18.88■□□□□ 0.61
XRCC3O43542 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC18.88■□□□□ 0.61
XRCC3O43542 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms