Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21■□□□□ 0.95
PROM1O43490 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21■□□□□ 0.95
PROM1O43490 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21■□□□□ 0.95
PROM1O43490 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
PROM1O43490 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PROM1O43490 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PROM1O43490 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.99■□□□□ 0.95
PROM1O43490 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.99■□□□□ 0.95
PROM1O43490 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PROM1O43490 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PROM1O43490 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PROM1O43490 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.99■□□□□ 0.95
PROM1O43490 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.99■□□□□ 0.95
PROM1O43490 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.99■□□□□ 0.95
PROM1O43490 AC099791.2-201ENST00000605725 427 ntBASIC20.99■□□□□ 0.95
PROM1O43490 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
PROM1O43490 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
PROM1O43490 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.99■□□□□ 0.95
PROM1O43490 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
PROM1O43490 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
PROM1O43490 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PROM1O43490 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
PROM1O43490 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.99■□□□□ 0.95
PROM1O43490 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
PROM1O43490 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
PROM1O43490 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
PROM1O43490 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PROM1O43490 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.98■□□□□ 0.95
PROM1O43490 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PROM1O43490 AC009086.3-201ENST00000623486 1008 ntBASIC20.98■□□□□ 0.95
PROM1O43490 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
PROM1O43490 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PROM1O43490 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.98■□□□□ 0.95
PROM1O43490 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PROM1O43490 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PROM1O43490 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PROM1O43490 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.97■□□□□ 0.95
PROM1O43490 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
PROM1O43490 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.97■□□□□ 0.95
PROM1O43490 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
PROM1O43490 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
PROM1O43490 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
PROM1O43490 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PROM1O43490 AL499627.2-201ENST00000606283 725 ntBASIC20.97■□□□□ 0.95
PROM1O43490 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
PROM1O43490 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.97■□□□□ 0.95
PROM1O43490 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PROM1O43490 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PROM1O43490 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.97■□□□□ 0.95
PROM1O43490 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
PROM1O43490 AC008406.3-201ENST00000620001 1374 ntBASIC20.97■□□□□ 0.95
PROM1O43490 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PROM1O43490 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PROM1O43490 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
PROM1O43490 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PROM1O43490 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
PROM1O43490 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.96■□□□□ 0.95
PROM1O43490 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PROM1O43490 AC006455.2-201ENST00000429931 906 ntBASIC20.96■□□□□ 0.95
PROM1O43490 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.96■□□□□ 0.95
PROM1O43490 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PROM1O43490 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PROM1O43490 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
PROM1O43490 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
PROM1O43490 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
PROM1O43490 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
PROM1O43490 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
PROM1O43490 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PROM1O43490 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PROM1O43490 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PROM1O43490 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.95■□□□□ 0.94
PROM1O43490 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PROM1O43490 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.95■□□□□ 0.94
PROM1O43490 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.95■□□□□ 0.94
PROM1O43490 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
PROM1O43490 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PROM1O43490 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PROM1O43490 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.95■□□□□ 0.94
PROM1O43490 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
PROM1O43490 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
PROM1O43490 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PROM1O43490 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PROM1O43490 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PROM1O43490 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PROM1O43490 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PROM1O43490 AC092171.4-201ENST00000609130 632 ntBASIC20.94■□□□□ 0.94
PROM1O43490 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PROM1O43490 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PROM1O43490 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PROM1O43490 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PROM1O43490 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
PROM1O43490 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.93■□□□□ 0.94
PROM1O43490 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.93■□□□□ 0.94
PROM1O43490 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
PROM1O43490 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PROM1O43490 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PROM1O43490 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
PROM1O43490 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PROM1O43490 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.93■□□□□ 0.94
PROM1O43490 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms