Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SDCBPO00560 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC18.77■□□□□ 0.6
SDCBPO00560 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC18.76■□□□□ 0.59
SDCBPO00560 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SDCBPO00560 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SDCBPO00560 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC18.76■□□□□ 0.59
SDCBPO00560 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SDCBPO00560 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
SDCBPO00560 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC18.76■□□□□ 0.59
SDCBPO00560 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SDCBPO00560 AL137060.1-201ENST00000618151 2648 ntBASIC18.76■□□□□ 0.59
SDCBPO00560 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SDCBPO00560 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SDCBPO00560 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SDCBPO00560 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SDCBPO00560 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SDCBPO00560 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SDCBPO00560 AC004448.1-201ENST00000458332 883 ntBASIC18.75■□□□□ 0.59
SDCBPO00560 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC18.75■□□□□ 0.59
SDCBPO00560 LSM7-203ENST00000585409 512 ntTSL 2 BASIC18.75■□□□□ 0.59
SDCBPO00560 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SDCBPO00560 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SDCBPO00560 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SDCBPO00560 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SDCBPO00560 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SDCBPO00560 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC18.74■□□□□ 0.59
SDCBPO00560 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
SDCBPO00560 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SDCBPO00560 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDCBPO00560 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDCBPO00560 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDCBPO00560 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDCBPO00560 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDCBPO00560 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SDCBPO00560 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
SDCBPO00560 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC18.74■□□□□ 0.59
SDCBPO00560 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDCBPO00560 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC18.74■□□□□ 0.59
SDCBPO00560 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDCBPO00560 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDCBPO00560 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDCBPO00560 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC18.74■□□□□ 0.59
SDCBPO00560 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDCBPO00560 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SDCBPO00560 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SDCBPO00560 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC18.73■□□□□ 0.59
SDCBPO00560 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDCBPO00560 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDCBPO00560 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC18.73■□□□□ 0.59
SDCBPO00560 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDCBPO00560 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC18.73■□□□□ 0.59
SDCBPO00560 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC18.73■□□□□ 0.59
SDCBPO00560 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDCBPO00560 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDCBPO00560 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
SDCBPO00560 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SDCBPO00560 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDCBPO00560 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC18.72■□□□□ 0.59
SDCBPO00560 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDCBPO00560 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDCBPO00560 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC18.72■□□□□ 0.59
SDCBPO00560 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDCBPO00560 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDCBPO00560 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SDCBPO00560 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SDCBPO00560 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SDCBPO00560 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDCBPO00560 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDCBPO00560 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC18.72■□□□□ 0.59
SDCBPO00560 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDCBPO00560 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SDCBPO00560 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDCBPO00560 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDCBPO00560 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDCBPO00560 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDCBPO00560 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDCBPO00560 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDCBPO00560 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDCBPO00560 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SDCBPO00560 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDCBPO00560 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
SDCBPO00560 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC18.71■□□□□ 0.59
SDCBPO00560 AC137630.3-201ENST00000607245 391 ntBASIC18.71■□□□□ 0.59
SDCBPO00560 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SDCBPO00560 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC18.71■□□□□ 0.59
SDCBPO00560 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SDCBPO00560 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SDCBPO00560 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC18.71■□□□□ 0.59
SDCBPO00560 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDCBPO00560 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDCBPO00560 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC18.71■□□□□ 0.59
SDCBPO00560 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
SDCBPO00560 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
SDCBPO00560 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SDCBPO00560 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SDCBPO00560 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
SDCBPO00560 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC18.7■□□□□ 0.58
SDCBPO00560 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SDCBPO00560 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC18.7■□□□□ 0.58
SDCBPO00560 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms