Protein–RNA interactions for Protein: A0A0B4J249

TRAV5, T-cell receptor alpha variable 5 (Fragment), humanhuman

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV5A0A0B4J249 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV5A0A0B4J249 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV5A0A0B4J249 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAV5A0A0B4J249 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV5A0A0B4J249 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV5A0A0B4J249 MTX2-204ENST00000443241 799 ntTSL 3 BASIC17.18■□□□□ 0.34
TRAV5A0A0B4J249 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC17.18■□□□□ 0.34
TRAV5A0A0B4J249 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV5A0A0B4J249 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV5A0A0B4J249 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
TRAV5A0A0B4J249 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAV5A0A0B4J249 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
TRAV5A0A0B4J249 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC17.17■□□□□ 0.34
TRAV5A0A0B4J249 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC17.17■□□□□ 0.34
TRAV5A0A0B4J249 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC17.17■□□□□ 0.34
TRAV5A0A0B4J249 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV5A0A0B4J249 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC17.17■□□□□ 0.34
TRAV5A0A0B4J249 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
TRAV5A0A0B4J249 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
TRAV5A0A0B4J249 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC17.17■□□□□ 0.34
TRAV5A0A0B4J249 AC004448.1-201ENST00000458332 883 ntBASIC17.17■□□□□ 0.34
TRAV5A0A0B4J249 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC17.17■□□□□ 0.34
TRAV5A0A0B4J249 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV5A0A0B4J249 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV5A0A0B4J249 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC17.17■□□□□ 0.34
TRAV5A0A0B4J249 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC17.17■□□□□ 0.34
TRAV5A0A0B4J249 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
TRAV5A0A0B4J249 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV5A0A0B4J249 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
TRAV5A0A0B4J249 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV5A0A0B4J249 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV5A0A0B4J249 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV5A0A0B4J249 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
TRAV5A0A0B4J249 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV5A0A0B4J249 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV5A0A0B4J249 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV5A0A0B4J249 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV5A0A0B4J249 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV5A0A0B4J249 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV5A0A0B4J249 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV5A0A0B4J249 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC17.16■□□□□ 0.34
TRAV5A0A0B4J249 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
TRAV5A0A0B4J249 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC17.16■□□□□ 0.34
TRAV5A0A0B4J249 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV5A0A0B4J249 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV5A0A0B4J249 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
TRAV5A0A0B4J249 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV5A0A0B4J249 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC17.16■□□□□ 0.34
TRAV5A0A0B4J249 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV5A0A0B4J249 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC17.16■□□□□ 0.34
TRAV5A0A0B4J249 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
TRAV5A0A0B4J249 AC087742.1-201ENST00000575880 1738 ntBASIC17.16■□□□□ 0.34
TRAV5A0A0B4J249 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV5A0A0B4J249 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC17.15■□□□□ 0.34
TRAV5A0A0B4J249 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV5A0A0B4J249 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV5A0A0B4J249 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV5A0A0B4J249 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV5A0A0B4J249 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV5A0A0B4J249 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV5A0A0B4J249 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV5A0A0B4J249 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV5A0A0B4J249 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.34
TRAV5A0A0B4J249 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
TRAV5A0A0B4J249 AL024507.2-201ENST00000606070 2574 ntBASIC17.14■□□□□ 0.33
TRAV5A0A0B4J249 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC17.14■□□□□ 0.33
TRAV5A0A0B4J249 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC17.14■□□□□ 0.33
TRAV5A0A0B4J249 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV5A0A0B4J249 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV5A0A0B4J249 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
TRAV5A0A0B4J249 MIR4281-201ENST00000580852 62 ntBASIC17.14■□□□□ 0.33
TRAV5A0A0B4J249 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC17.14■□□□□ 0.33
TRAV5A0A0B4J249 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC17.14■□□□□ 0.33
TRAV5A0A0B4J249 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV5A0A0B4J249 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV5A0A0B4J249 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC17.14■□□□□ 0.33
TRAV5A0A0B4J249 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV5A0A0B4J249 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV5A0A0B4J249 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
TRAV5A0A0B4J249 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC17.14■□□□□ 0.33
TRAV5A0A0B4J249 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV5A0A0B4J249 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
TRAV5A0A0B4J249 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
TRAV5A0A0B4J249 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC17.13■□□□□ 0.33
TRAV5A0A0B4J249 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV5A0A0B4J249 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV5A0A0B4J249 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV5A0A0B4J249 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV5A0A0B4J249 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC17.13■□□□□ 0.33
TRAV5A0A0B4J249 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC17.13■□□□□ 0.33
TRAV5A0A0B4J249 THA1P-201ENST00000590384 1145 ntBASIC17.13■□□□□ 0.33
TRAV5A0A0B4J249 BHLHE23-202ENST00000612929 1109 ntBASIC17.13■□□□□ 0.33
TRAV5A0A0B4J249 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
TRAV5A0A0B4J249 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV5A0A0B4J249 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV5A0A0B4J249 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC17.13■□□□□ 0.33
TRAV5A0A0B4J249 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV5A0A0B4J249 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV5A0A0B4J249 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC17.12■□□□□ 0.33
TRAV5A0A0B4J249 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms