Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 AIG1-203ENST00000367596 559 ntTSL 2 BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 ZNRD1-204ENST00000376785 754 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 AC006987.1-201ENST00000413610 527 ntBASIC13.11□□□□□ -0.31
COL28A1Q2UY09 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 IP6K2-223ENST00000453202 571 ntTSL 4 BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 AP000533.1-201ENST00000456143 1177 ntBASIC13.11□□□□□ -0.31
COL28A1Q2UY09 AC022274.1-201ENST00000467082 490 ntTSL 5 BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 ALG1L7P-201ENST00000502317 768 ntBASIC13.11□□□□□ -0.31
COL28A1Q2UY09 RPSAP70-201ENST00000504462 864 ntBASIC13.11□□□□□ -0.31
COL28A1Q2UY09 CCNL2P1-201ENST00000512846 969 ntBASIC13.11□□□□□ -0.31
COL28A1Q2UY09 GLIPR1L2-203ENST00000547164 509 ntTSL 5 BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 AL512356.1-201ENST00000548203 535 ntTSL 3 BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 AL157871.1-201ENST00000555428 429 ntTSL 3 BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 SKA2-205ENST00000580541 689 ntTSL 3 BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 RN7SL480P-201ENST00000581481 294 ntBASIC13.11□□□□□ -0.31
COL28A1Q2UY09 RN7SL478P-201ENST00000584358 298 ntBASIC13.11□□□□□ -0.31
COL28A1Q2UY09 AC021321.1-201ENST00000607397 1113 ntBASIC13.11□□□□□ -0.31
COL28A1Q2UY09 Z82244.2-201ENST00000632196 448 ntBASIC13.11□□□□□ -0.31
COL28A1Q2UY09 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 AC067931.2-201ENST00000623655 2003 ntBASIC13.11□□□□□ -0.31
COL28A1Q2UY09 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 XAGE2-201ENST00000286049 618 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 AL359649.1-202ENST00000375713 443 ntTSL 5 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 PAX5-203ENST00000377847 996 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 SAA1-202ENST00000405158 675 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 CYP4F29P-202ENST00000428301 1279 ntTSL 2 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 CDKN2A-AS1-201ENST00000441769 823 ntBASIC13.1□□□□□ -0.31
COL28A1Q2UY09 IGKV1OR2-108-201ENST00000453673 353 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 RNASEH2CP1-201ENST00000454281 502 ntBASIC13.1□□□□□ -0.31
COL28A1Q2UY09 FAM86JP-202ENST00000484500 988 ntBASIC13.1□□□□□ -0.31
COL28A1Q2UY09 AC022447.5-201ENST00000504817 392 ntBASIC13.1□□□□□ -0.31
COL28A1Q2UY09 PAX5-213ENST00000523145 830 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 TBX5-AS1-202ENST00000531024 766 ntTSL 3 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 BATF-202ENST00000555504 361 ntTSL 2 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 AC007728.1-202ENST00000564510 787 ntTSL 3 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 AL136982.5-201ENST00000605222 294 ntBASIC13.1□□□□□ -0.31
COL28A1Q2UY09 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 SHMT1P1-201ENST00000419974 1312 ntBASIC13.1□□□□□ -0.31
COL28A1Q2UY09 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 RPL13AP3-202ENST00000494676 1473 ntBASIC13.1□□□□□ -0.31
COL28A1Q2UY09 OS9-206ENST00000435406 2346 ntTSL 2 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 CLUAP1-201ENST00000341633 1643 ntTSL 5 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
COL28A1Q2UY09 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL28A1Q2UY09 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms