Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 CSAG3-201ENST00000599845 844 ntAPPRIS P5 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 AC008555.6-201ENST00000605047 458 ntTSL 2 BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC13.13□□□□□ -0.31
COL28A1Q2UY09 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC13.13□□□□□ -0.31
COL28A1Q2UY09 AC091769.1-201ENST00000619576 568 ntBASIC13.13□□□□□ -0.31
COL28A1Q2UY09 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 AC079331.1-201ENST00000623200 1200 ntBASIC13.13□□□□□ -0.31
COL28A1Q2UY09 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 AL590556.2-202ENST00000636906 844 ntBASIC13.13□□□□□ -0.31
COL28A1Q2UY09 CSAG2-203ENST00000638741 844 ntAPPRIS P5 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 MAPT-IT1-201ENST00000624111 3016 ntBASIC13.13□□□□□ -0.31
COL28A1Q2UY09 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 AC073869.1-201ENST00000415574 2762 ntBASIC13.13□□□□□ -0.31
COL28A1Q2UY09 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 PLEKHG6-202ENST00000304581 1424 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 C7orf57-202ENST00000420324 1957 ntTSL 5 BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 CCT8L1P-201ENST00000465400 1674 ntBASIC13.12□□□□□ -0.31
COL28A1Q2UY09 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 FTH1P18-201ENST00000412071 549 ntBASIC13.12□□□□□ -0.31
COL28A1Q2UY09 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 KRT18P62-201ENST00000446618 1287 ntBASIC13.12□□□□□ -0.31
COL28A1Q2UY09 AC007679.1-201ENST00000458609 502 ntBASIC13.12□□□□□ -0.31
COL28A1Q2UY09 RN7SL788P-201ENST00000460504 316 ntBASIC13.12□□□□□ -0.31
COL28A1Q2UY09 PRSS3P1-201ENST00000503996 742 ntBASIC13.12□□□□□ -0.31
COL28A1Q2UY09 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 STAU2-212ENST00000521419 972 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 AP003043.1-201ENST00000527804 547 ntTSL 4 BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 KLF17P1-201ENST00000547105 1126 ntBASIC13.12□□□□□ -0.31
COL28A1Q2UY09 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 SULT1A3-206ENST00000563322 906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 SULT1A4-204ENST00000565290 906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 DERL2-206ENST00000572834 589 ntTSL 3 BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 GACAT2-201ENST00000579368 818 ntTSL 2 BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 AC015912.3-201ENST00000619432 348 ntBASIC13.12□□□□□ -0.31
COL28A1Q2UY09 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 BX322534.1-201ENST00000635574 241 ntBASIC13.12□□□□□ -0.31
COL28A1Q2UY09 AC215524.1-201ENST00000635696 241 ntBASIC13.12□□□□□ -0.31
COL28A1Q2UY09 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 STAT4-202ENST00000392320 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 LYRM1-202ENST00000396052 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 PID1-202ENST00000392054 2745 ntTSL 2 BASIC13.12□□□□□ -0.31
COL28A1Q2UY09 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
COL28A1Q2UY09 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms