Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC27.36■■□□□ 1.97
RTFDC1Q9BY42 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
RTFDC1Q9BY42 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
RTFDC1Q9BY42 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
RTFDC1Q9BY42 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC27.35■■□□□ 1.97
RTFDC1Q9BY42 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC27.35■■□□□ 1.97
RTFDC1Q9BY42 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC27.35■■□□□ 1.97
RTFDC1Q9BY42 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC27.35■■□□□ 1.97
RTFDC1Q9BY42 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC27.35■■□□□ 1.97
RTFDC1Q9BY42 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
RTFDC1Q9BY42 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC27.35■■□□□ 1.97
RTFDC1Q9BY42 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
RTFDC1Q9BY42 AP003733.4-201ENST00000623785 1697 ntBASIC27.35■■□□□ 1.97
RTFDC1Q9BY42 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC27.35■■□□□ 1.97
RTFDC1Q9BY42 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
RTFDC1Q9BY42 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC27.35■■□□□ 1.97
RTFDC1Q9BY42 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC27.35■■□□□ 1.97
RTFDC1Q9BY42 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
RTFDC1Q9BY42 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
RTFDC1Q9BY42 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
RTFDC1Q9BY42 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
RTFDC1Q9BY42 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
RTFDC1Q9BY42 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC27.34■■□□□ 1.97
RTFDC1Q9BY42 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC27.34■■□□□ 1.97
RTFDC1Q9BY42 HLA-L-209ENST00000420110 1011 ntBASIC27.34■■□□□ 1.97
RTFDC1Q9BY42 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC27.34■■□□□ 1.97
RTFDC1Q9BY42 RAP2CP1-201ENST00000605103 478 ntBASIC27.34■■□□□ 1.97
RTFDC1Q9BY42 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC27.34■■□□□ 1.97
RTFDC1Q9BY42 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
RTFDC1Q9BY42 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
RTFDC1Q9BY42 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
RTFDC1Q9BY42 STX4-202ENST00000394998 1498 ntTSL 2 BASIC27.33■■□□□ 1.97
RTFDC1Q9BY42 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
RTFDC1Q9BY42 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC27.33■■□□□ 1.97
RTFDC1Q9BY42 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
RTFDC1Q9BY42 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
RTFDC1Q9BY42 AC135731.1-201ENST00000569415 2548 ntBASIC27.33■■□□□ 1.97
RTFDC1Q9BY42 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
RTFDC1Q9BY42 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
RTFDC1Q9BY42 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC27.32■■□□□ 1.96
RTFDC1Q9BY42 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC27.32■■□□□ 1.96
RTFDC1Q9BY42 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC27.32■■□□□ 1.96
RTFDC1Q9BY42 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
RTFDC1Q9BY42 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
RTFDC1Q9BY42 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC27.31■■□□□ 1.96
RTFDC1Q9BY42 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC27.31■■□□□ 1.96
RTFDC1Q9BY42 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
RTFDC1Q9BY42 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC27.31■■□□□ 1.96
RTFDC1Q9BY42 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
RTFDC1Q9BY42 AC080038.1-201ENST00000611274 1154 ntBASIC27.31■■□□□ 1.96
RTFDC1Q9BY42 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC27.31■■□□□ 1.96
RTFDC1Q9BY42 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC27.31■■□□□ 1.96
RTFDC1Q9BY42 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
RTFDC1Q9BY42 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
RTFDC1Q9BY42 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
RTFDC1Q9BY42 TMEM202-AS1-202ENST00000565181 2325 ntBASIC27.3■■□□□ 1.96
RTFDC1Q9BY42 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
RTFDC1Q9BY42 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
RTFDC1Q9BY42 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
RTFDC1Q9BY42 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC27.3■■□□□ 1.96
RTFDC1Q9BY42 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC27.3■■□□□ 1.96
RTFDC1Q9BY42 TPRG1LP1-201ENST00000598702 760 ntBASIC27.3■■□□□ 1.96
RTFDC1Q9BY42 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC27.3■■□□□ 1.96
RTFDC1Q9BY42 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
RTFDC1Q9BY42 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
RTFDC1Q9BY42 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
RTFDC1Q9BY42 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
RTFDC1Q9BY42 AC138932.3-201ENST00000567634 1902 ntBASIC27.29■■□□□ 1.96
RTFDC1Q9BY42 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96
RTFDC1Q9BY42 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
RTFDC1Q9BY42 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC27.29■■□□□ 1.96
RTFDC1Q9BY42 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC27.29■■□□□ 1.96
RTFDC1Q9BY42 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC27.28■■□□□ 1.96
RTFDC1Q9BY42 LINC01529-204ENST00000636474 1715 ntBASIC27.28■■□□□ 1.96
RTFDC1Q9BY42 AC144652.1-201ENST00000609974 1624 ntBASIC27.28■■□□□ 1.96
RTFDC1Q9BY42 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC27.28■■□□□ 1.96
RTFDC1Q9BY42 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC27.28■■□□□ 1.96
RTFDC1Q9BY42 MFF-208ENST00000409616 1247 ntTSL 5 BASIC27.28■■□□□ 1.96
RTFDC1Q9BY42 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC27.28■■□□□ 1.96
RTFDC1Q9BY42 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC27.28■■□□□ 1.96
RTFDC1Q9BY42 TK2-208ENST00000545043 1120 ntTSL 2 BASIC27.28■■□□□ 1.96
RTFDC1Q9BY42 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC27.28■■□□□ 1.96
RTFDC1Q9BY42 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC27.28■■□□□ 1.96
RTFDC1Q9BY42 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC27.28■■□□□ 1.96
RTFDC1Q9BY42 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC27.28■■□□□ 1.96
RTFDC1Q9BY42 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC27.28■■□□□ 1.96
RTFDC1Q9BY42 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC27.28■■□□□ 1.96
RTFDC1Q9BY42 MED17-227ENST00000640521 2047 ntTSL 5 BASIC27.28■■□□□ 1.96
RTFDC1Q9BY42 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC27.28■■□□□ 1.96
RTFDC1Q9BY42 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
RTFDC1Q9BY42 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
RTFDC1Q9BY42 EI24-213ENST00000618552 1747 ntTSL 5 BASIC27.27■■□□□ 1.96
RTFDC1Q9BY42 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC27.27■■□□□ 1.96
RTFDC1Q9BY42 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
RTFDC1Q9BY42 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC27.27■■□□□ 1.96
RTFDC1Q9BY42 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC27.27■■□□□ 1.96
RTFDC1Q9BY42 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC27.27■■□□□ 1.96
RTFDC1Q9BY42 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC27.27■■□□□ 1.96
RTFDC1Q9BY42 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
RTFDC1Q9BY42 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 140.4 ms