Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC020928.2-201ENST00000588717 2197 ntBASIC29.64■■■□□ 2.34
USHBP1Q8N6Y0 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC29.64■■■□□ 2.34
USHBP1Q8N6Y0 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC29.64■■■□□ 2.33
USHBP1Q8N6Y0 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.33
USHBP1Q8N6Y0 FP325331.1-202ENST00000623531 1380 ntBASIC29.64■■■□□ 2.33
USHBP1Q8N6Y0 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC29.63■■■□□ 2.33
USHBP1Q8N6Y0 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
USHBP1Q8N6Y0 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC29.63■■■□□ 2.33
USHBP1Q8N6Y0 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC29.63■■■□□ 2.33
USHBP1Q8N6Y0 AC004911.1-201ENST00000416316 871 ntBASIC29.63■■■□□ 2.33
USHBP1Q8N6Y0 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC29.63■■■□□ 2.33
USHBP1Q8N6Y0 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
USHBP1Q8N6Y0 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
USHBP1Q8N6Y0 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC29.63■■■□□ 2.33
USHBP1Q8N6Y0 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
USHBP1Q8N6Y0 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC29.63■■■□□ 2.33
USHBP1Q8N6Y0 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC29.63■■■□□ 2.33
USHBP1Q8N6Y0 CREM-210ENST00000374721 2020 ntTSL 5 BASIC29.62■■■□□ 2.33
USHBP1Q8N6Y0 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC29.62■■■□□ 2.33
USHBP1Q8N6Y0 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC29.62■■■□□ 2.33
USHBP1Q8N6Y0 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC29.62■■■□□ 2.33
USHBP1Q8N6Y0 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC29.62■■■□□ 2.33
USHBP1Q8N6Y0 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC29.62■■■□□ 2.33
USHBP1Q8N6Y0 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC29.62■■■□□ 2.33
USHBP1Q8N6Y0 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
USHBP1Q8N6Y0 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
USHBP1Q8N6Y0 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
USHBP1Q8N6Y0 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC29.61■■■□□ 2.33
USHBP1Q8N6Y0 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC29.61■■■□□ 2.33
USHBP1Q8N6Y0 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
USHBP1Q8N6Y0 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
USHBP1Q8N6Y0 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
USHBP1Q8N6Y0 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC29.61■■■□□ 2.33
USHBP1Q8N6Y0 KRT18P14-201ENST00000534205 1250 ntBASIC29.61■■■□□ 2.33
USHBP1Q8N6Y0 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC29.61■■■□□ 2.33
USHBP1Q8N6Y0 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
USHBP1Q8N6Y0 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
USHBP1Q8N6Y0 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
USHBP1Q8N6Y0 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
USHBP1Q8N6Y0 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
USHBP1Q8N6Y0 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
USHBP1Q8N6Y0 LINC01529-204ENST00000636474 1715 ntBASIC29.6■■■□□ 2.33
USHBP1Q8N6Y0 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
USHBP1Q8N6Y0 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
USHBP1Q8N6Y0 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC29.6■■■□□ 2.33
USHBP1Q8N6Y0 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
USHBP1Q8N6Y0 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC29.6■■■□□ 2.33
USHBP1Q8N6Y0 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
USHBP1Q8N6Y0 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
USHBP1Q8N6Y0 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC29.59■■■□□ 2.33
USHBP1Q8N6Y0 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
USHBP1Q8N6Y0 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC29.59■■■□□ 2.33
USHBP1Q8N6Y0 TERF1P2-201ENST00000583350 1212 ntBASIC29.59■■■□□ 2.33
USHBP1Q8N6Y0 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
USHBP1Q8N6Y0 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC29.59■■■□□ 2.33
USHBP1Q8N6Y0 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
USHBP1Q8N6Y0 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC29.58■■■□□ 2.33
USHBP1Q8N6Y0 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
USHBP1Q8N6Y0 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
USHBP1Q8N6Y0 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
USHBP1Q8N6Y0 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC29.58■■■□□ 2.33
USHBP1Q8N6Y0 NTF6G-201ENST00000591094 616 ntBASIC29.58■■■□□ 2.33
USHBP1Q8N6Y0 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
USHBP1Q8N6Y0 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
USHBP1Q8N6Y0 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
USHBP1Q8N6Y0 LHPP-203ENST00000392757 840 ntTSL 3 BASIC29.57■■■□□ 2.32
USHBP1Q8N6Y0 NT5C3AP1-201ENST00000394500 1012 ntBASIC29.57■■■□□ 2.32
USHBP1Q8N6Y0 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC29.57■■■□□ 2.32
USHBP1Q8N6Y0 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC29.57■■■□□ 2.32
USHBP1Q8N6Y0 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC29.57■■■□□ 2.32
USHBP1Q8N6Y0 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC29.57■■■□□ 2.32
USHBP1Q8N6Y0 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC29.56■■■□□ 2.32
USHBP1Q8N6Y0 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC29.56■■■□□ 2.32
USHBP1Q8N6Y0 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
USHBP1Q8N6Y0 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
USHBP1Q8N6Y0 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC29.56■■■□□ 2.32
USHBP1Q8N6Y0 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC29.56■■■□□ 2.32
USHBP1Q8N6Y0 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
USHBP1Q8N6Y0 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC29.55■■■□□ 2.32
USHBP1Q8N6Y0 STX4-202ENST00000394998 1498 ntTSL 2 BASIC29.55■■■□□ 2.32
USHBP1Q8N6Y0 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC29.55■■■□□ 2.32
USHBP1Q8N6Y0 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
USHBP1Q8N6Y0 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC29.55■■■□□ 2.32
USHBP1Q8N6Y0 GXYLT1P2-201ENST00000433312 1230 ntBASIC29.55■■■□□ 2.32
USHBP1Q8N6Y0 DLX3-202ENST00000512495 834 ntTSL 2 BASIC29.55■■■□□ 2.32
USHBP1Q8N6Y0 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC29.55■■■□□ 2.32
USHBP1Q8N6Y0 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC29.55■■■□□ 2.32
USHBP1Q8N6Y0 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC29.55■■■□□ 2.32
USHBP1Q8N6Y0 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
USHBP1Q8N6Y0 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
USHBP1Q8N6Y0 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
USHBP1Q8N6Y0 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC29.54■■■□□ 2.32
USHBP1Q8N6Y0 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC29.54■■■□□ 2.32
USHBP1Q8N6Y0 EED-207ENST00000528180 1745 ntTSL 5 BASIC29.54■■■□□ 2.32
USHBP1Q8N6Y0 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
USHBP1Q8N6Y0 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
USHBP1Q8N6Y0 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
USHBP1Q8N6Y0 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
USHBP1Q8N6Y0 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC29.53■■■□□ 2.32
USHBP1Q8N6Y0 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms