Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
CCDC88AQ3V6T2 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC27.57■■■□□ 2
CCDC88AQ3V6T2 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
CCDC88AQ3V6T2 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC27.57■■■□□ 2
CCDC88AQ3V6T2 MAP2K4P1-201ENST00000438453 1195 ntBASIC27.57■■■□□ 2
CCDC88AQ3V6T2 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC27.57■■■□□ 2
CCDC88AQ3V6T2 DBI-210ENST00000542275 757 ntTSL 5 BASIC27.57■■■□□ 2
CCDC88AQ3V6T2 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
CCDC88AQ3V6T2 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
CCDC88AQ3V6T2 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC27.56■■■□□ 2
CCDC88AQ3V6T2 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC27.56■■■□□ 2
CCDC88AQ3V6T2 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC27.56■■■□□ 2
CCDC88AQ3V6T2 GALNS-213ENST00000569433 723 ntTSL 3 BASIC27.56■■■□□ 2
CCDC88AQ3V6T2 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
CCDC88AQ3V6T2 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC27.56■■■□□ 2
CCDC88AQ3V6T2 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC27.56■■■□□ 2
CCDC88AQ3V6T2 EI24-204ENST00000527235 1625 ntTSL 5 BASIC27.56■■■□□ 2
CCDC88AQ3V6T2 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
CCDC88AQ3V6T2 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC27.56■■■□□ 2
CCDC88AQ3V6T2 MPST-204ENST00000404393 1329 ntTSL 5 BASIC27.55■■■□□ 2
CCDC88AQ3V6T2 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
CCDC88AQ3V6T2 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
CCDC88AQ3V6T2 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
CCDC88AQ3V6T2 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC27.55■■■□□ 2
CCDC88AQ3V6T2 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC27.55■■■□□ 2
CCDC88AQ3V6T2 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC27.55■■■□□ 2
CCDC88AQ3V6T2 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC27.55■■■□□ 2
CCDC88AQ3V6T2 AC133637.1-201ENST00000624115 1537 ntBASIC27.55■■■□□ 2
CCDC88AQ3V6T2 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC27.54■■■□□ 2
CCDC88AQ3V6T2 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC27.54■■■□□ 2
CCDC88AQ3V6T2 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC27.54■■■□□ 2
CCDC88AQ3V6T2 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC27.54■■■□□ 2
CCDC88AQ3V6T2 WWOX-218ENST00000627394 894 ntTSL 5 BASIC27.54■■■□□ 2
CCDC88AQ3V6T2 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC27.54■■■□□ 2
CCDC88AQ3V6T2 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC27.54■■■□□ 2
CCDC88AQ3V6T2 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
CCDC88AQ3V6T2 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC27.54■■■□□ 2
CCDC88AQ3V6T2 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC27.53■■■□□ 2
CCDC88AQ3V6T2 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC27.53■■■□□ 2
CCDC88AQ3V6T2 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC27.53■■■□□ 2
CCDC88AQ3V6T2 TMEM191A-211ENST00000637163 1067 ntBASIC27.53■■■□□ 2
CCDC88AQ3V6T2 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC27.53■■■□□ 2
CCDC88AQ3V6T2 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC27.53■■■□□ 2
CCDC88AQ3V6T2 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC27.53■■■□□ 2
CCDC88AQ3V6T2 GAS2L1P2-201ENST00000436355 1356 ntBASIC27.53■■■□□ 2
CCDC88AQ3V6T2 AC020928.2-201ENST00000588717 2197 ntBASIC27.53■■■□□ 2
CCDC88AQ3V6T2 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC27.53■■■□□ 2
CCDC88AQ3V6T2 STX7-201ENST00000367937 1090 ntTSL 5 BASIC27.53■■■□□ 2
CCDC88AQ3V6T2 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC27.53■■■□□ 2
CCDC88AQ3V6T2 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC27.53■■■□□ 2
CCDC88AQ3V6T2 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC27.53■■■□□ 2
CCDC88AQ3V6T2 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC27.53■■■□□ 2
CCDC88AQ3V6T2 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
CCDC88AQ3V6T2 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC27.52■■■□□ 2
CCDC88AQ3V6T2 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC27.52■■■□□ 2
CCDC88AQ3V6T2 MED17-227ENST00000640521 2047 ntTSL 5 BASIC27.52■■■□□ 2
CCDC88AQ3V6T2 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC27.52■■■□□ 2
CCDC88AQ3V6T2 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC27.52■■■□□ 2
CCDC88AQ3V6T2 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC27.52■■■□□ 2
CCDC88AQ3V6T2 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC27.52■■■□□ 2
CCDC88AQ3V6T2 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
CCDC88AQ3V6T2 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC27.52■■■□□ 2
CCDC88AQ3V6T2 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC27.51■■■□□ 2
CCDC88AQ3V6T2 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC27.51■■□□□ 1.99
CCDC88AQ3V6T2 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC27.51■■□□□ 1.99
CCDC88AQ3V6T2 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
CCDC88AQ3V6T2 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC27.51■■□□□ 1.99
CCDC88AQ3V6T2 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC27.51■■□□□ 1.99
CCDC88AQ3V6T2 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC27.51■■□□□ 1.99
CCDC88AQ3V6T2 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC27.51■■□□□ 1.99
CCDC88AQ3V6T2 HSCB-202ENST00000398941 955 ntTSL 2 BASIC27.51■■□□□ 1.99
CCDC88AQ3V6T2 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
CCDC88AQ3V6T2 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC27.51■■□□□ 1.99
CCDC88AQ3V6T2 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
CCDC88AQ3V6T2 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC27.5■■□□□ 1.99
CCDC88AQ3V6T2 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC27.5■■□□□ 1.99
CCDC88AQ3V6T2 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC27.5■■□□□ 1.99
CCDC88AQ3V6T2 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC27.5■■□□□ 1.99
CCDC88AQ3V6T2 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
CCDC88AQ3V6T2 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC27.5■■□□□ 1.99
CCDC88AQ3V6T2 AC138932.3-201ENST00000567634 1902 ntBASIC27.5■■□□□ 1.99
CCDC88AQ3V6T2 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
CCDC88AQ3V6T2 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC27.5■■□□□ 1.99
CCDC88AQ3V6T2 NCF1B-203ENST00000435988 1254 ntBASIC27.5■■□□□ 1.99
CCDC88AQ3V6T2 AL161729.1-201ENST00000604104 1402 ntBASIC27.49■■□□□ 1.99
CCDC88AQ3V6T2 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC27.49■■□□□ 1.99
CCDC88AQ3V6T2 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC27.49■■□□□ 1.99
CCDC88AQ3V6T2 AC006970.2-201ENST00000450065 779 ntBASIC27.49■■□□□ 1.99
CCDC88AQ3V6T2 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC27.49■■□□□ 1.99
CCDC88AQ3V6T2 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
CCDC88AQ3V6T2 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC27.49■■□□□ 1.99
CCDC88AQ3V6T2 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC27.49■■□□□ 1.99
CCDC88AQ3V6T2 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC27.49■■□□□ 1.99
CCDC88AQ3V6T2 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
CCDC88AQ3V6T2 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
CCDC88AQ3V6T2 APTR-205ENST00000447009 902 ntTSL 2 BASIC27.49■■□□□ 1.99
CCDC88AQ3V6T2 AC141586.4-201ENST00000624558 1573 ntBASIC27.49■■□□□ 1.99
CCDC88AQ3V6T2 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC27.48■■□□□ 1.99
CCDC88AQ3V6T2 AP004607.4-201ENST00000530158 1459 ntBASIC27.48■■□□□ 1.99
CCDC88AQ3V6T2 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC27.48■■□□□ 1.99
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms