Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
RFX4Q33E94 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
RFX4Q33E94 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RFX4Q33E94 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.62■□□□□ 0.89
RFX4Q33E94 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RFX4Q33E94 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RFX4Q33E94 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RFX4Q33E94 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
RFX4Q33E94 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
RFX4Q33E94 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RFX4Q33E94 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RFX4Q33E94 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
RFX4Q33E94 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
RFX4Q33E94 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RFX4Q33E94 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.61■□□□□ 0.89
RFX4Q33E94 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC20.61■□□□□ 0.89
RFX4Q33E94 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
RFX4Q33E94 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RFX4Q33E94 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.61■□□□□ 0.89
RFX4Q33E94 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.61■□□□□ 0.89
RFX4Q33E94 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
RFX4Q33E94 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.61■□□□□ 0.89
RFX4Q33E94 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.61■□□□□ 0.89
RFX4Q33E94 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
RFX4Q33E94 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.61■□□□□ 0.89
RFX4Q33E94 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
RFX4Q33E94 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
RFX4Q33E94 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
RFX4Q33E94 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
RFX4Q33E94 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RFX4Q33E94 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RFX4Q33E94 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
RFX4Q33E94 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RFX4Q33E94 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RFX4Q33E94 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.6■□□□□ 0.89
RFX4Q33E94 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RFX4Q33E94 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
RFX4Q33E94 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RFX4Q33E94 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RFX4Q33E94 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.6■□□□□ 0.89
RFX4Q33E94 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RFX4Q33E94 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RFX4Q33E94 AC019171.1-201ENST00000601251 1056 ntBASIC20.6■□□□□ 0.89
RFX4Q33E94 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
RFX4Q33E94 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RFX4Q33E94 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.6■□□□□ 0.89
RFX4Q33E94 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.6■□□□□ 0.89
RFX4Q33E94 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RFX4Q33E94 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
RFX4Q33E94 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.6■□□□□ 0.89
RFX4Q33E94 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.59■□□□□ 0.89
RFX4Q33E94 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RFX4Q33E94 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RFX4Q33E94 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.59■□□□□ 0.89
RFX4Q33E94 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.59■□□□□ 0.89
RFX4Q33E94 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
RFX4Q33E94 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
RFX4Q33E94 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RFX4Q33E94 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
RFX4Q33E94 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RFX4Q33E94 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RFX4Q33E94 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RFX4Q33E94 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RFX4Q33E94 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RFX4Q33E94 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
RFX4Q33E94 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
RFX4Q33E94 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RFX4Q33E94 AC022616.5-201ENST00000518796 181 ntBASIC20.58■□□□□ 0.89
RFX4Q33E94 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RFX4Q33E94 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RFX4Q33E94 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC20.58■□□□□ 0.88
RFX4Q33E94 AC079630.1-202ENST00000618127 1840 ntBASIC20.57■□□□□ 0.88
RFX4Q33E94 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFX4Q33E94 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFX4Q33E94 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFX4Q33E94 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFX4Q33E94 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFX4Q33E94 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFX4Q33E94 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RFX4Q33E94 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFX4Q33E94 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFX4Q33E94 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFX4Q33E94 AC131274.2-201ENST00000580697 1507 ntBASIC20.57■□□□□ 0.88
RFX4Q33E94 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
RFX4Q33E94 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RFX4Q33E94 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RFX4Q33E94 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RFX4Q33E94 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RFX4Q33E94 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RFX4Q33E94 MTX2-204ENST00000443241 799 ntTSL 3 BASIC20.56■□□□□ 0.88
RFX4Q33E94 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RFX4Q33E94 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.56■□□□□ 0.88
RFX4Q33E94 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
RFX4Q33E94 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.56■□□□□ 0.88
RFX4Q33E94 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RFX4Q33E94 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC20.56■□□□□ 0.88
RFX4Q33E94 FBXW4P1-201ENST00000426721 2239 ntBASIC20.55■□□□□ 0.88
RFX4Q33E94 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFX4Q33E94 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.55■□□□□ 0.88
RFX4Q33E94 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms