Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
TTC3P53804 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC24.18■■□□□ 1.46
TTC3P53804 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
TTC3P53804 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
TTC3P53804 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
TTC3P53804 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC24.17■■□□□ 1.46
TTC3P53804 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
TTC3P53804 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC24.17■■□□□ 1.46
TTC3P53804 AC004911.1-201ENST00000416316 871 ntBASIC24.17■■□□□ 1.46
TTC3P53804 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC24.17■■□□□ 1.46
TTC3P53804 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
TTC3P53804 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC24.17■■□□□ 1.46
TTC3P53804 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
TTC3P53804 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC24.17■■□□□ 1.46
TTC3P53804 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC24.16■■□□□ 1.46
TTC3P53804 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
TTC3P53804 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
TTC3P53804 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC24.16■■□□□ 1.46
TTC3P53804 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
TTC3P53804 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
TTC3P53804 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
TTC3P53804 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC24.16■■□□□ 1.46
TTC3P53804 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
TTC3P53804 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
TTC3P53804 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
TTC3P53804 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC24.15■■□□□ 1.46
TTC3P53804 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC24.15■■□□□ 1.46
TTC3P53804 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
TTC3P53804 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
TTC3P53804 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC24.15■■□□□ 1.46
TTC3P53804 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC24.15■■□□□ 1.46
TTC3P53804 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC24.15■■□□□ 1.46
TTC3P53804 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
TTC3P53804 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
TTC3P53804 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.46
TTC3P53804 MPST-204ENST00000404393 1329 ntTSL 5 BASIC24.14■■□□□ 1.46
TTC3P53804 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
TTC3P53804 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
TTC3P53804 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC24.14■■□□□ 1.45
TTC3P53804 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.45
TTC3P53804 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC24.14■■□□□ 1.45
TTC3P53804 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
TTC3P53804 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
TTC3P53804 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC24.14■■□□□ 1.45
TTC3P53804 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC24.14■■□□□ 1.45
TTC3P53804 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
TTC3P53804 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC24.14■■□□□ 1.45
TTC3P53804 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.45
TTC3P53804 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC24.14■■□□□ 1.45
TTC3P53804 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC24.13■■□□□ 1.45
TTC3P53804 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
TTC3P53804 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
TTC3P53804 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
TTC3P53804 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
TTC3P53804 ID1-201ENST00000376105 1233 ntBASIC24.13■■□□□ 1.45
TTC3P53804 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC24.13■■□□□ 1.45
TTC3P53804 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
TTC3P53804 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC24.13■■□□□ 1.45
TTC3P53804 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
TTC3P53804 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
TTC3P53804 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC24.12■■□□□ 1.45
TTC3P53804 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
TTC3P53804 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC24.12■■□□□ 1.45
TTC3P53804 DLX3-202ENST00000512495 834 ntTSL 2 BASIC24.12■■□□□ 1.45
TTC3P53804 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
TTC3P53804 VPS53-216ENST00000574029 585 ntTSL 4 BASIC24.11■■□□□ 1.45
TTC3P53804 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC24.11■■□□□ 1.45
TTC3P53804 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC24.11■■□□□ 1.45
TTC3P53804 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC24.11■■□□□ 1.45
TTC3P53804 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC24.11■■□□□ 1.45
TTC3P53804 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
TTC3P53804 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC24.1■■□□□ 1.45
TTC3P53804 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC24.1■■□□□ 1.45
TTC3P53804 TPRG1LP1-201ENST00000598702 760 ntBASIC24.1■■□□□ 1.45
TTC3P53804 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
TTC3P53804 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
TTC3P53804 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC24.1■■□□□ 1.45
TTC3P53804 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
TTC3P53804 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
TTC3P53804 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
TTC3P53804 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC24.1■■□□□ 1.45
TTC3P53804 GXYLT1P2-201ENST00000433312 1230 ntBASIC24.1■■□□□ 1.45
TTC3P53804 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC24.1■■□□□ 1.45
TTC3P53804 NTF6G-201ENST00000591094 616 ntBASIC24.1■■□□□ 1.45
TTC3P53804 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
TTC3P53804 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
TTC3P53804 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
TTC3P53804 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC24.09■■□□□ 1.45
TTC3P53804 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
TTC3P53804 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC24.09■■□□□ 1.45
TTC3P53804 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC24.09■■□□□ 1.45
TTC3P53804 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC24.09■■□□□ 1.45
TTC3P53804 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC24.09■■□□□ 1.45
TTC3P53804 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC24.09■■□□□ 1.45
TTC3P53804 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC24.09■■□□□ 1.45
TTC3P53804 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC24.09■■□□□ 1.45
TTC3P53804 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
TTC3P53804 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
TTC3P53804 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC24.08■■□□□ 1.45
TTC3P53804 LINC01529-204ENST00000636474 1715 ntBASIC24.08■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms